Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 MIR522-201ENST00000385071 87 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 RNA5SP482-201ENST00000391269 118 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 SUMO2P12-201ENST00000405924 140 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 SNRPGP10-201ENST00000432323 225 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 AL021397.1-201ENST00000451806 248 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 SNORD116-25-201ENST00000516517 92 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 RNU6-1291P-201ENST00000516591 104 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 Y_RNA.714-201ENST00000517065 90 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 SNORA31.25-201ENST00000517242 134 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 AC084364.2-201ENST00000546924 395 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 MIR548X2-201ENST00000579776 100 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 MIR5002-201ENST00000584713 97 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 AP001485.1-201ENST00000604799 199 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 Y_RNA.783-201ENST00000613546 102 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.72□□□□□ -2.13
PDLIM4P50479 AC132825.6-201ENST00000638861 357 ntBASIC1.72□□□□□ -2.13
PDLIM4P50479 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
PDLIM4P50479 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
PDLIM4P50479 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
PDLIM4P50479 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.71□□□□□ -2.14
PDLIM4P50479 Y_RNA.267-201ENST00000364679 109 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 Y_RNA.634-201ENST00000364811 113 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 Y_RNA.343-201ENST00000365354 112 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 Y_RNA.488-201ENST00000384403 102 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 MIR569-201ENST00000385228 96 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 SNORA26.9-201ENST00000391322 122 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 AC006461.1-201ENST00000412637 326 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 AC233266.1-201ENST00000454518 96 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 RNU7-149P-201ENST00000516739 59 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 RNU2-19P-201ENST00000517288 84 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 SUB1P4-201ENST00000566062 339 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 MIR4529-201ENST00000578110 78 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 AC008507.4-201ENST00000585464 127 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 AC242852.1-201ENST00000612151 96 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 AC244015.1-201ENST00000622301 99 ntBASIC1.71□□□□□ -2.14
PDLIM4P50479 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.71□□□□□ -2.14
PDLIM4P50479 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.71□□□□□ -2.14
PDLIM4P50479 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.7□□□□□ -2.14
PDLIM4P50479 AL157777.2-201ENST00000258070 137 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 RNA5SP99-201ENST00000364020 114 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 RNU6-151P-201ENST00000364158 107 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 U8.13-201ENST00000390842 128 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 Y_RNA.622-201ENST00000411091 108 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 AL445685.2-201ENST00000422551 342 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 HMGN2P19-201ENST00000425149 265 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 AL606517.2-201ENST00000442855 241 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 RNU7-197P-201ENST00000458836 62 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 RN7SL274P-201ENST00000492268 272 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 RNA5SP182-201ENST00000516064 82 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.7□□□□□ -2.14
PDLIM4P50479 Pinc.1-201ENST00000616452 154 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 AL591926.4-201ENST00000616895 298 ntBASIC1.7□□□□□ -2.14
PDLIM4P50479 AL442644.1-201ENST00000454390 3105 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 Y_RNA.66-201ENST00000362862 102 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 SNORD24-201ENST00000383884 75 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 RNU6-950P-201ENST00000384651 107 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 RNU6-768P-201ENST00000384683 107 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 RNU6-131P-201ENST00000391144 107 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 SNORA75.5-201ENST00000391291 81 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 Y_RNA.621-201ENST00000411065 96 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 AC245047.3-201ENST00000429428 127 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 RNU2-56P-201ENST00000516826 190 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 AC090142.3-201ENST00000519012 385 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 MIR5094-201ENST00000578766 85 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 U1.36-201ENST00000620684 176 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 MIR8054-201ENST00000620877 86 ntBASIC1.69□□□□□ -2.14
PDLIM4P50479 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
PDLIM4P50479 AC008555.8-201ENST00000623602 2168 ntBASIC1.68□□□□□ -2.14
PDLIM4P50479 MIR126-201ENST00000362291 85 ntBASIC1.68□□□□□ -2.14
PDLIM4P50479 Y_RNA.251-201ENST00000364551 99 ntBASIC1.68□□□□□ -2.14
PDLIM4P50479 RNU6-818P-201ENST00000364837 108 ntBASIC1.68□□□□□ -2.14
PDLIM4P50479 Y_RNA.486-201ENST00000384398 107 ntBASIC1.68□□□□□ -2.14
PDLIM4P50479 RNU2-70P-201ENST00000410718 179 ntBASIC1.68□□□□□ -2.14
PDLIM4P50479 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
PDLIM4P50479 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC1.68□□□□□ -2.14
PDLIM4P50479 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.68□□□□□ -2.14
PDLIM4P50479 HMGN2P23-201ENST00000456759 269 ntBASIC1.68□□□□□ -2.14
PDLIM4P50479 RNA5SP458-201ENST00000516188 119 ntBASIC1.68□□□□□ -2.14
PDLIM4P50479 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.68□□□□□ -2.14
PDLIM4P50479 SNORA28-201ENST00000606769 126 ntBASIC1.68□□□□□ -2.14
PDLIM4P50479 MIR3658-201ENST00000636291 56 ntBASIC1.68□□□□□ -2.14
PDLIM4P50479 MIR6844-201ENST00000637122 62 ntBASIC1.68□□□□□ -2.14
PDLIM4P50479 ZNF702P-202ENST00000434269 1966 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
PDLIM4P50479 RNU4-11P-201ENST00000365287 132 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 Y_RNA.497-201ENST00000384447 98 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 Y_RNA.521-201ENST00000384560 114 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 RNU6-440P-201ENST00000390882 105 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 RNA5SP109-201ENST00000391010 116 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 RPL30P13-201ENST00000418873 348 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 RPL31P63-201ENST00000422565 375 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC1.67□□□□□ -2.14
PDLIM4P50479 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.67□□□□□ -2.14
PDLIM4P50479 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.67□□□□□ -2.14
PDLIM4P50479 RNVU1-2-201ENST00000516326 135 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 SNORA31.10-201ENST00000516482 106 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 RNU6-504P-201ENST00000516568 104 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 RNU6-365P-201ENST00000517113 106 ntBASIC1.67□□□□□ -2.14
PDLIM4P50479 AC112693.2-201ENST00000556538 232 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 116.1 ms