Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 MTND3P9-201ENST00000429526 346 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 SNRPGP14-201ENST00000435400 219 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 RNU6-107P-201ENST00000516643 102 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 AC022616.4-201ENST00000522985 181 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 AL049777.1-201ENST00000622740 518 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 AP002371.2-201ENST00000624450 503 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 Y_RNA.123-201ENST00000363338 102 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 RNU6-268P-201ENST00000364174 107 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 SNORD70.1-201ENST00000391007 85 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 Y_RNA.588-201ENST00000391254 102 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC-1.56□□□□□ -2.66
CUX1P39880 RPL22P17-201ENST00000438729 315 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 RPL39P25-201ENST00000449384 154 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 MTATP6P14-201ENST00000455189 673 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 RPL39P5-202ENST00000512505 151 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 AC022616.6-201ENST00000520479 119 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC-1.56□□□□□ -2.66
CUX1P39880 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC-1.56□□□□□ -2.66
CUX1P39880 AL158050.2-201ENST00000605336 568 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 RNU6-85P-201ENST00000605989 107 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 U6.114-201ENST00000636407 96 ntBASIC-1.56□□□□□ -2.66
CUX1P39880 RNU5F-3P-201ENST00000363767 117 ntBASIC-1.57□□□□□ -2.66
CUX1P39880 Y_RNA.329-201ENST00000365209 107 ntBASIC-1.57□□□□□ -2.66
CUX1P39880 MIRLET7F2-201ENST00000385277 83 ntBASIC-1.57□□□□□ -2.66
CUX1P39880 U8.15-201ENST00000390947 134 ntBASIC-1.57□□□□□ -2.66
CUX1P39880 MIR450B-201ENST00000401182 78 ntBASIC-1.57□□□□□ -2.66
CUX1P39880 RNU6-370P-201ENST00000411008 104 ntBASIC-1.57□□□□□ -2.66
CUX1P39880 AC074085.1-201ENST00000413598 418 ntBASIC-1.57□□□□□ -2.66
CUX1P39880 MTATP6P18-201ENST00000417994 673 ntBASIC-1.57□□□□□ -2.66
CUX1P39880 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-1.57□□□□□ -2.66
CUX1P39880 RNU6-175P-201ENST00000516896 107 ntBASIC-1.57□□□□□ -2.66
CUX1P39880 AL356055.1-201ENST00000602528 446 ntBASIC-1.57□□□□□ -2.66
CUX1P39880 U6.115-201ENST00000636045 103 ntBASIC-1.57□□□□□ -2.66
CUX1P39880 AC006927.2-201ENST00000639256 389 ntBASIC-1.57□□□□□ -2.66
CUX1P39880 RNU5B-4P-201ENST00000363508 111 ntBASIC-1.58□□□□□ -2.66
CUX1P39880 SNORD74.6-201ENST00000364796 70 ntBASIC-1.58□□□□□ -2.66
CUX1P39880 SNORD114-29-201ENST00000364819 70 ntBASIC-1.58□□□□□ -2.66
CUX1P39880 Y_RNA.543-201ENST00000384649 107 ntBASIC-1.58□□□□□ -2.66
CUX1P39880 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-1.58□□□□□ -2.66
CUX1P39880 Y_RNA.38-201ENST00000362617 102 ntBASIC-1.59□□□□□ -2.66
CUX1P39880 Y_RNA.346-201ENST00000365385 112 ntBASIC-1.59□□□□□ -2.66
CUX1P39880 Y_RNA.442-201ENST00000384131 102 ntBASIC-1.59□□□□□ -2.66
CUX1P39880 RNU6-541P-201ENST00000384709 110 ntBASIC-1.59□□□□□ -2.66
CUX1P39880 MTND1P11-201ENST00000456661 876 ntBASIC-1.59□□□□□ -2.66
CUX1P39880 RNU7-161P-201ENST00000517289 62 ntBASIC-1.59□□□□□ -2.66
CUX1P39880 MTND1P24-201ENST00000552175 861 ntBASIC-1.59□□□□□ -2.66
CUX1P39880 AL158209.2-201ENST00000619266 216 ntBASIC-1.59□□□□□ -2.66
CUX1P39880 RNU6-433P-201ENST00000363216 104 ntBASIC-1.6□□□□□ -2.67
CUX1P39880 RNU6-224P-201ENST00000384055 107 ntBASIC-1.6□□□□□ -2.67
CUX1P39880 Y_RNA.494-201ENST00000384432 111 ntBASIC-1.6□□□□□ -2.67
CUX1P39880 SNORD115.1-201ENST00000391109 76 ntBASIC-1.6□□□□□ -2.67
CUX1P39880 RNY4P36-201ENST00000391116 96 ntBASIC-1.6□□□□□ -2.67
CUX1P39880 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC-1.6□□□□□ -2.67
CUX1P39880 AC091179.3-201ENST00000474761 144 ntBASIC-1.6□□□□□ -2.67
CUX1P39880 AC107027.2-201ENST00000512197 115 ntBASIC-1.6□□□□□ -2.67
CUX1P39880 RNU2-69P-201ENST00000516061 100 ntBASIC-1.6□□□□□ -2.67
CUX1P39880 RNU6-1028P-201ENST00000517164 93 ntBASIC-1.6□□□□□ -2.67
CUX1P39880 Y_RNA.110-201ENST00000363220 99 ntBASIC-1.61□□□□□ -2.67
CUX1P39880 RNU6-479P-201ENST00000516348 105 ntBASIC-1.61□□□□□ -2.67
CUX1P39880 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC-1.61□□□□□ -2.67
CUX1P39880 Y_RNA.37-201ENST00000362606 108 ntBASIC-1.61□□□□□ -2.67
CUX1P39880 Y_RNA.128-201ENST00000363391 112 ntBASIC-1.61□□□□□ -2.67
CUX1P39880 RNU6-266P-201ENST00000364225 107 ntBASIC-1.61□□□□□ -2.67
CUX1P39880 Y_RNA.352-201ENST00000365439 102 ntBASIC-1.61□□□□□ -2.67
CUX1P39880 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.61□□□□□ -2.67
CUX1P39880 MRPL42P2-201ENST00000403169 426 ntBASIC-1.61□□□□□ -2.67
CUX1P39880 RNU6-1001P-201ENST00000411265 100 ntBASIC-1.61□□□□□ -2.67
CUX1P39880 AC024405.2-202ENST00000532731 184 ntBASIC-1.61□□□□□ -2.67
CUX1P39880 AC005828.6-201ENST00000606610 232 ntBASIC-1.61□□□□□ -2.67
CUX1P39880 AC132825.6-201ENST00000638861 357 ntBASIC-1.61□□□□□ -2.67
CUX1P39880 RNU4-75P-201ENST00000364621 146 ntBASIC-1.62□□□□□ -2.67
CUX1P39880 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.62□□□□□ -2.67
CUX1P39880 AC016907.1-201ENST00000419483 435 ntBASIC-1.62□□□□□ -2.67
CUX1P39880 ELOCP4-201ENST00000420090 333 ntBASIC-1.62□□□□□ -2.67
CUX1P39880 USMG5P1-201ENST00000425964 177 ntBASIC-1.62□□□□□ -2.67
CUX1P39880 RNU7-134P-201ENST00000458997 64 ntBASIC-1.62□□□□□ -2.67
CUX1P39880 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC-1.62□□□□□ -2.67
CUX1P39880 AC134698.4-201ENST00000523451 826 ntBASIC-1.62□□□□□ -2.67
CUX1P39880 AP000676.1-201ENST00000533307 52 ntBASIC-1.62□□□□□ -2.67
CUX1P39880 MTCO3P23-201ENST00000561363 289 ntBASIC-1.62□□□□□ -2.67
CUX1P39880 uc_338.11-201ENST00000619132 160 ntBASIC-1.62□□□□□ -2.67
CUX1P39880 AC009248.2-201ENST00000619826 254 ntBASIC-1.62□□□□□ -2.67
CUX1P39880 Y_RNA.497-201ENST00000384447 98 ntBASIC-1.63□□□□□ -2.67
CUX1P39880 Y_RNA.578-201ENST00000390903 88 ntBASIC-1.63□□□□□ -2.67
CUX1P39880 RNU6-437P-201ENST00000459408 95 ntBASIC-1.63□□□□□ -2.67
CUX1P39880 AC022166.2-201ENST00000566030 536 ntTSL 4 BASIC-1.63□□□□□ -2.67
CUX1P39880 Y_RNA.56-201ENST00000362798 112 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 Y_RNA.117-201ENST00000363294 101 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 RNY1P12-201ENST00000364251 105 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 RNU6-1317P-201ENST00000364582 104 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 Y_RNA.465-201ENST00000384293 102 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 RNU5E-9P-201ENST00000411164 104 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 MTND2P30-201ENST00000456663 382 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 snoU13.13-201ENST00000458842 104 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 RNU6-732P-201ENST00000516033 103 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 RNU6-287P-201ENST00000516230 98 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 Y_RNA.715-201ENST00000517082 110 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 AC006386.1-201ENST00000619436 415 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC-1.64□□□□□ -2.67
CUX1P39880 RNU6-913P-201ENST00000390913 95 ntBASIC-1.65□□□□□ -2.67
Retrieved 100 of 98,524 protein–RNA pairs in 108.9 ms