Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 Y_RNA.714-201ENST00000517065 90 ntBASIC2.29□□□□□ -2.04
MSX2P35548 MIR3613-201ENST00000579844 87 ntBASIC2.29□□□□□ -2.04
MSX2P35548 MIR6895-201ENST00000613497 78 ntBASIC2.29□□□□□ -2.04
MSX2P35548 MIR203B-201ENST00000636080 86 ntBASIC2.29□□□□□ -2.04
MSX2P35548 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.04
MSX2P35548 RNU6-1298P-201ENST00000362456 101 ntBASIC2.28□□□□□ -2.04
MSX2P35548 Y_RNA.346-201ENST00000365385 112 ntBASIC2.28□□□□□ -2.04
MSX2P35548 MIR144-201ENST00000384886 86 ntBASIC2.28□□□□□ -2.04
MSX2P35548 SNRPGP14-201ENST00000435400 219 ntBASIC2.28□□□□□ -2.04
MSX2P35548 RN7SKP132-201ENST00000516001 208 ntBASIC2.28□□□□□ -2.04
MSX2P35548 SNORA31.25-201ENST00000517242 134 ntBASIC2.28□□□□□ -2.04
MSX2P35548 MIR4319-201ENST00000577285 85 ntBASIC2.28□□□□□ -2.04
MSX2P35548 MIR5197-201ENST00000583721 112 ntBASIC2.28□□□□□ -2.04
MSX2P35548 AC006441.5-201ENST00000612680 209 ntBASIC2.28□□□□□ -2.04
MSX2P35548 UGP2-230ENST00000626380 276 ntTSL 5 BASIC2.28□□□□□ -2.04
MSX2P35548 CTSLP2-204ENST00000629029 392 ntBASIC2.28□□□□□ -2.04
MSX2P35548 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.28□□□□□ -2.04
MSX2P35548 AC131280.1-202ENST00000624067 4211 ntBASIC2.28□□□□□ -2.04
MSX2P35548 MTND5P18-201ENST00000445624 1801 ntBASIC2.28□□□□□ -2.04
MSX2P35548 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.28□□□□□ -2.05
MSX2P35548 RNU6-147P-201ENST00000383983 107 ntBASIC2.27□□□□□ -2.05
MSX2P35548 MIR9-1-201ENST00000385198 89 ntBASIC2.27□□□□□ -2.05
MSX2P35548 HMGN2P39-201ENST00000398005 273 ntBASIC2.27□□□□□ -2.05
MSX2P35548 MIR548O-201ENST00000408583 114 ntBASIC2.27□□□□□ -2.05
MSX2P35548 AC105272.1-201ENST00000438604 198 ntBASIC2.27□□□□□ -2.05
MSX2P35548 Y_RNA.649-201ENST00000459077 103 ntBASIC2.27□□□□□ -2.05
MSX2P35548 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.27□□□□□ -2.05
MSX2P35548 IGHVIII-5-1-201ENST00000523059 99 ntBASIC2.27□□□□□ -2.05
MSX2P35548 MIR3162-201ENST00000581818 82 ntBASIC2.27□□□□□ -2.05
MSX2P35548 AL121890.5-201ENST00000620848 304 ntBASIC2.27□□□□□ -2.05
MSX2P35548 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.27□□□□□ -2.05
MSX2P35548 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.27□□□□□ -2.05
MSX2P35548 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
MSX2P35548 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.26□□□□□ -2.05
MSX2P35548 SNORD68-201ENST00000363214 84 ntBASIC2.26□□□□□ -2.05
MSX2P35548 RNU6-23P-201ENST00000363283 107 ntBASIC2.26□□□□□ -2.05
MSX2P35548 SNORD23.1-201ENST00000408212 104 ntBASIC2.26□□□□□ -2.05
MSX2P35548 RNA5SP184-201ENST00000411071 108 ntBASIC2.26□□□□□ -2.05
MSX2P35548 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.26□□□□□ -2.05
MSX2P35548 CALM2P4-201ENST00000430810 426 ntBASIC2.26□□□□□ -2.05
MSX2P35548 RNU6-113P-201ENST00000516653 101 ntBASIC2.26□□□□□ -2.05
MSX2P35548 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.26□□□□□ -2.05
MSX2P35548 AC007336.1-201ENST00000576365 3828 ntBASIC2.26□□□□□ -2.05
MSX2P35548 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
MSX2P35548 RNU6-268P-201ENST00000364174 107 ntBASIC2.25□□□□□ -2.05
MSX2P35548 RNU6-880P-201ENST00000384526 107 ntBASIC2.25□□□□□ -2.05
MSX2P35548 MIR548A1-201ENST00000385041 97 ntBASIC2.25□□□□□ -2.05
MSX2P35548 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.25□□□□□ -2.05
MSX2P35548 RNU7-25P-201ENST00000516544 62 ntBASIC2.25□□□□□ -2.05
MSX2P35548 IGLV3-17-201ENST00000519099 244 ntBASIC2.25□□□□□ -2.05
MSX2P35548 AC121758.2-201ENST00000553271 193 ntBASIC2.25□□□□□ -2.05
MSX2P35548 MIR5694-201ENST00000581190 76 ntBASIC2.25□□□□□ -2.05
MSX2P35548 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.24□□□□□ -2.05
MSX2P35548 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
MSX2P35548 RNU6-442P-201ENST00000383968 104 ntBASIC2.24□□□□□ -2.05
MSX2P35548 MIR29C-201ENST00000385231 88 ntBASIC2.24□□□□□ -2.05
MSX2P35548 RNA5SP109-201ENST00000391010 116 ntBASIC2.24□□□□□ -2.05
MSX2P35548 MIR1263-201ENST00000408324 86 ntBASIC2.24□□□□□ -2.05
MSX2P35548 AC245047.3-201ENST00000429428 127 ntBASIC2.24□□□□□ -2.05
MSX2P35548 AC108938.1-201ENST00000451204 136 ntBASIC2.24□□□□□ -2.05
MSX2P35548 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.24□□□□□ -2.05
MSX2P35548 RNA5SP320-201ENST00000516263 124 ntBASIC2.24□□□□□ -2.05
MSX2P35548 MIR4435-1-201ENST00000582552 80 ntBASIC2.24□□□□□ -2.05
MSX2P35548 AC104984.5-201ENST00000586878 94 ntBASIC2.24□□□□□ -2.05
MSX2P35548 AC067747.1-201ENST00000608026 250 ntBASIC2.24□□□□□ -2.05
MSX2P35548 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.24□□□□□ -2.05
MSX2P35548 AC003984.1-201ENST00000450977 4104 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
MSX2P35548 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
MSX2P35548 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
MSX2P35548 RNU4-82P-201ENST00000362443 140 ntBASIC2.23□□□□□ -2.05
MSX2P35548 SNORD14E-201ENST00000364009 85 ntBASIC2.23□□□□□ -2.05
MSX2P35548 snoU2-30.1-201ENST00000365012 70 ntBASIC2.23□□□□□ -2.05
MSX2P35548 Y_RNA.366-201ENST00000365540 102 ntBASIC2.23□□□□□ -2.05
MSX2P35548 Y_RNA.410-201ENST00000383992 113 ntBASIC2.23□□□□□ -2.05
MSX2P35548 Y_RNA.547-201ENST00000384654 119 ntBASIC2.23□□□□□ -2.05
MSX2P35548 MIR196B-201ENST00000384852 84 ntBASIC2.23□□□□□ -2.05
MSX2P35548 MIR518A2-201ENST00000384966 87 ntBASIC2.23□□□□□ -2.05
MSX2P35548 MIR27B-201ENST00000385129 97 ntBASIC2.23□□□□□ -2.05
MSX2P35548 MIR802-201ENST00000390235 94 ntBASIC2.23□□□□□ -2.05
MSX2P35548 RNA5SP482-201ENST00000391269 118 ntBASIC2.23□□□□□ -2.05
MSX2P35548 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.23□□□□□ -2.05
MSX2P35548 AC104435.1-201ENST00000483483 166 ntBASIC2.23□□□□□ -2.05
MSX2P35548 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.23□□□□□ -2.05
MSX2P35548 SNORD45.4-201ENST00000516629 73 ntBASIC2.23□□□□□ -2.05
MSX2P35548 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC2.23□□□□□ -2.05
MSX2P35548 AC134878.1-201ENST00000619901 243 ntBASIC2.23□□□□□ -2.05
MSX2P35548 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.23□□□□□ -2.05
MSX2P35548 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
MSX2P35548 AC062016.1-201ENST00000355719 319 ntBASIC2.22□□□□□ -2.05
MSX2P35548 MIRLET7G-201ENST00000362280 84 ntBASIC2.22□□□□□ -2.05
MSX2P35548 RNU1-58P-201ENST00000362413 163 ntBASIC2.22□□□□□ -2.05
MSX2P35548 Y_RNA.37-201ENST00000362606 108 ntBASIC2.22□□□□□ -2.05
MSX2P35548 SNORD115-3-201ENST00000363100 82 ntBASIC2.22□□□□□ -2.05
MSX2P35548 SNORA6-201ENST00000384033 151 ntBASIC2.22□□□□□ -2.05
MSX2P35548 Y_RNA.528-201ENST00000384575 108 ntBASIC2.22□□□□□ -2.05
MSX2P35548 RNU6-938P-201ENST00000411285 103 ntBASIC2.22□□□□□ -2.05
MSX2P35548 RNA5SP508-201ENST00000411327 119 ntBASIC2.22□□□□□ -2.05
MSX2P35548 AL109933.2-201ENST00000452651 260 ntBASIC2.22□□□□□ -2.05
MSX2P35548 SNORD109B-201ENST00000458961 67 ntBASIC2.22□□□□□ -2.05
MSX2P35548 SNORD109A-201ENST00000459128 67 ntBASIC2.22□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 156 ms