Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 RNU6-504P-201ENST00000516568 104 ntBASIC2.55□□□□□ -2
COL6A1P12109 RNU1-142P-201ENST00000516682 145 ntBASIC2.55□□□□□ -2
COL6A1P12109 RNU6-295P-201ENST00000516901 104 ntBASIC2.55□□□□□ -2
COL6A1P12109 Y_RNA.714-201ENST00000517065 90 ntBASIC2.55□□□□□ -2
COL6A1P12109 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC2.55□□□□□ -2
COL6A1P12109 MIR3670-2-201ENST00000582974 65 ntBASIC2.55□□□□□ -2
COL6A1P12109 MIR3670-1-201ENST00000584160 65 ntBASIC2.55□□□□□ -2
COL6A1P12109 MIR3670-3-201ENST00000584855 65 ntBASIC2.55□□□□□ -2
COL6A1P12109 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC2.55□□□□□ -2
COL6A1P12109 AL353149.1-201ENST00000610667 244 ntBASIC2.55□□□□□ -2
COL6A1P12109 MIR3670-4-201ENST00000612260 65 ntBASIC2.55□□□□□ -2
COL6A1P12109 AC245060.5-201ENST00000610778 3293 ntBASIC2.55□□□□□ -2
COL6A1P12109 CCDC30-201ENST00000340612 2664 ntAPPRIS P2 TSL 5 BASIC2.54□□□□□ -2
COL6A1P12109 AL596028.1-201ENST00000326971 197 ntBASIC2.54□□□□□ -2
COL6A1P12109 RNU6-235P-201ENST00000362644 107 ntBASIC2.54□□□□□ -2
COL6A1P12109 Y_RNA.140-201ENST00000363474 103 ntBASIC2.54□□□□□ -2
COL6A1P12109 SNORA16B-201ENST00000364674 135 ntBASIC2.54□□□□□ -2
COL6A1P12109 MIR515-2-201ENST00000384883 83 ntBASIC2.54□□□□□ -2
COL6A1P12109 MIR515-1-201ENST00000384884 83 ntBASIC2.54□□□□□ -2
COL6A1P12109 RNA5SP323-201ENST00000391094 133 ntBASIC2.54□□□□□ -2
COL6A1P12109 SNRPGP10-201ENST00000432323 225 ntBASIC2.54□□□□□ -2
COL6A1P12109 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.54□□□□□ -2
COL6A1P12109 AL358944.1-201ENST00000528537 144 ntBASIC2.54□□□□□ -2
COL6A1P12109 MIR6079-201ENST00000635807 62 ntBASIC2.54□□□□□ -2
COL6A1P12109 MIR338-201ENST00000636369 67 ntBASIC2.54□□□□□ -2
COL6A1P12109 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.54□□□□□ -2
COL6A1P12109 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.53□□□□□ -2
COL6A1P12109 RNA5SP276-201ENST00000362580 94 ntBASIC2.53□□□□□ -2
COL6A1P12109 Y_RNA.294-201ENST00000364916 102 ntBASIC2.53□□□□□ -2
COL6A1P12109 Y_RNA.486-201ENST00000384398 107 ntBASIC2.53□□□□□ -2
COL6A1P12109 RNU6-160P-201ENST00000384591 107 ntBASIC2.53□□□□□ -2
COL6A1P12109 AL603914.1-201ENST00000401964 204 ntBASIC2.53□□□□□ -2
COL6A1P12109 AL023284.1-201ENST00000403956 276 ntBASIC2.53□□□□□ -2
COL6A1P12109 RNA5SP127-201ENST00000411051 133 ntBASIC2.53□□□□□ -2
COL6A1P12109 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.53□□□□□ -2
COL6A1P12109 RNU1-131P-201ENST00000458943 161 ntBASIC2.53□□□□□ -2
COL6A1P12109 RNU7-94P-201ENST00000459576 63 ntBASIC2.53□□□□□ -2
COL6A1P12109 RPS27P21-201ENST00000486977 252 ntBASIC2.53□□□□□ -2
COL6A1P12109 RNU6-1291P-201ENST00000516591 104 ntBASIC2.53□□□□□ -2
COL6A1P12109 Y_RNA.690-201ENST00000516603 95 ntBASIC2.53□□□□□ -2
COL6A1P12109 RNU6-341P-201ENST00000516973 96 ntBASIC2.53□□□□□ -2
COL6A1P12109 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.53□□□□□ -2
COL6A1P12109 AC091178.2-201ENST00000584401 117 ntBASIC2.53□□□□□ -2
COL6A1P12109 Y_RNA.253-201ENST00000364562 112 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 RNU6-476P-201ENST00000384726 107 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 SNORA80E-201ENST00000384744 137 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 MIR624-201ENST00000385217 97 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 RNA5SP467-201ENST00000391274 118 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 MLLT10P1-201ENST00000418346 262 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 AL158823.1-201ENST00000418441 478 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 AL158147.1-201ENST00000443970 75 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 ATP5J2P3-201ENST00000451550 258 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 RNU6-772P-201ENST00000516042 105 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 RNU7-128P-201ENST00000517247 62 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 AC133485.4-201ENST00000561835 220 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 AC138907.4-201ENST00000570107 226 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 AC087685.1-201ENST00000587507 141 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 AL365205.2-201ENST00000594586 68 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 U6.95-201ENST00000636931 70 ntBASIC2.52□□□□□ -2.01
COL6A1P12109 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
COL6A1P12109 ZNF355P-201ENST00000427301 3216 ntBASIC2.51□□□□□ -2.01
COL6A1P12109 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.51□□□□□ -2.01
COL6A1P12109 RNU1-17P-201ENST00000363022 152 ntBASIC2.51□□□□□ -2.01
COL6A1P12109 Y_RNA.267-201ENST00000364679 109 ntBASIC2.51□□□□□ -2.01
COL6A1P12109 MIR221-201ENST00000385135 110 ntBASIC2.51□□□□□ -2.01
COL6A1P12109 RNU11-3P-201ENST00000391111 133 ntBASIC2.51□□□□□ -2.01
COL6A1P12109 RNA5SP465-201ENST00000391195 109 ntBASIC2.51□□□□□ -2.01
COL6A1P12109 MTATP6P21-201ENST00000440681 189 ntBASIC2.51□□□□□ -2.01
COL6A1P12109 RPL23AP6-201ENST00000446637 472 ntBASIC2.51□□□□□ -2.01
COL6A1P12109 MRPS17P9-201ENST00000511924 393 ntBASIC2.51□□□□□ -2.01
COL6A1P12109 MIR514B-201ENST00000516774 80 ntBASIC2.51□□□□□ -2.01
COL6A1P12109 MIR3121-201ENST00000579680 77 ntBASIC2.51□□□□□ -2.01
COL6A1P12109 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.51□□□□□ -2.01
COL6A1P12109 MIR3914-2-201ENST00000637339 95 ntBASIC2.51□□□□□ -2.01
COL6A1P12109 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
COL6A1P12109 Y_RNA.66-201ENST00000362862 102 ntBASIC2.5□□□□□ -2.01
COL6A1P12109 Y_RNA.114-201ENST00000363265 113 ntBASIC2.5□□□□□ -2.01
COL6A1P12109 RNU6-647P-201ENST00000364243 107 ntBASIC2.5□□□□□ -2.01
COL6A1P12109 RNU6-1144P-201ENST00000384247 104 ntBASIC2.5□□□□□ -2.01
COL6A1P12109 Y_RNA.525-201ENST00000384570 113 ntBASIC2.5□□□□□ -2.01
COL6A1P12109 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
COL6A1P12109 MIR1287-201ENST00000408492 90 ntBASIC2.5□□□□□ -2.01
COL6A1P12109 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC2.5□□□□□ -2.01
COL6A1P12109 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.5□□□□□ -2.01
COL6A1P12109 RNA5SP233-201ENST00000459153 113 ntBASIC2.5□□□□□ -2.01
COL6A1P12109 NDUFA4P2-201ENST00000489989 244 ntBASIC2.5□□□□□ -2.01
COL6A1P12109 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.5□□□□□ -2.01
COL6A1P12109 RNU6-1053P-201ENST00000515930 101 ntBASIC2.5□□□□□ -2.01
COL6A1P12109 SNORA31.11-201ENST00000516528 139 ntBASIC2.5□□□□□ -2.01
COL6A1P12109 AC024995.1-201ENST00000523014 93 ntBASIC2.5□□□□□ -2.01
COL6A1P12109 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.49□□□□□ -2.01
COL6A1P12109 MIR126-201ENST00000362291 85 ntBASIC2.49□□□□□ -2.01
COL6A1P12109 Y_RNA.280-201ENST00000364765 112 ntBASIC2.49□□□□□ -2.01
COL6A1P12109 SNORA8-201ENST00000384574 139 ntBASIC2.49□□□□□ -2.01
COL6A1P12109 SNORA12.1-201ENST00000390873 148 ntBASIC2.49□□□□□ -2.01
COL6A1P12109 RNA5SP450-201ENST00000411206 102 ntBASIC2.49□□□□□ -2.01
COL6A1P12109 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.49□□□□□ -2.01
COL6A1P12109 AC108729.3-201ENST00000513484 108 ntBASIC2.49□□□□□ -2.01
COL6A1P12109 RNU5E-3P-201ENST00000515913 68 ntBASIC2.49□□□□□ -2.01
COL6A1P12109 RNU6-1061P-201ENST00000516530 99 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 127.4 ms