Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 Y_RNA.602-201ENST00000410535 92 ntBASIC0.89□□□□□ -2.27
MMP1P03956 AC098869.1-201ENST00000481627 292 ntBASIC0.89□□□□□ -2.27
MMP1P03956 CYCTP-201ENST00000504253 315 ntBASIC0.89□□□□□ -2.27
MMP1P03956 RNU6-191P-201ENST00000516295 94 ntBASIC0.89□□□□□ -2.27
MMP1P03956 RNU7-115P-201ENST00000516433 55 ntBASIC0.89□□□□□ -2.27
MMP1P03956 Y_RNA.721-201ENST00000517207 102 ntBASIC0.89□□□□□ -2.27
MMP1P03956 POLR3GP1-201ENST00000594073 261 ntBASIC0.89□□□□□ -2.27
MMP1P03956 AC007742.2-201ENST00000618226 398 ntBASIC0.89□□□□□ -2.27
MMP1P03956 AC008133.2-201ENST00000624540 351 ntBASIC0.89□□□□□ -2.27
MMP1P03956 AC027279.3-201ENST00000625055 122 ntBASIC0.89□□□□□ -2.27
MMP1P03956 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.89□□□□□ -2.27
MMP1P03956 AC068700.1-201ENST00000565862 3754 ntBASIC0.88□□□□□ -2.27
MMP1P03956 snoU2_19.2-201ENST00000363024 80 ntBASIC0.88□□□□□ -2.27
MMP1P03956 Y_RNA.136-201ENST00000363444 102 ntBASIC0.88□□□□□ -2.27
MMP1P03956 SNORA2.2-201ENST00000365473 135 ntBASIC0.88□□□□□ -2.27
MMP1P03956 Y_RNA.374-201ENST00000365606 101 ntBASIC0.88□□□□□ -2.27
MMP1P03956 Y_RNA.455-201ENST00000384230 98 ntBASIC0.88□□□□□ -2.27
MMP1P03956 MIR215-201ENST00000384858 110 ntBASIC0.88□□□□□ -2.27
MMP1P03956 RNU6-910P-201ENST00000390844 107 ntBASIC0.88□□□□□ -2.27
MMP1P03956 Y_RNA.581-201ENST00000391017 97 ntBASIC0.88□□□□□ -2.27
MMP1P03956 SNORA26.5-201ENST00000391215 123 ntBASIC0.88□□□□□ -2.27
MMP1P03956 MIR891A-201ENST00000401237 79 ntBASIC0.88□□□□□ -2.27
MMP1P03956 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.88□□□□□ -2.27
MMP1P03956 SNRPGP10-201ENST00000432323 225 ntBASIC0.88□□□□□ -2.27
MMP1P03956 POLR2KP2-201ENST00000438155 177 ntBASIC0.88□□□□□ -2.27
MMP1P03956 LINC01399-202ENST00000458450 244 ntBASIC0.88□□□□□ -2.27
MMP1P03956 snoU13.25-201ENST00000458945 104 ntBASIC0.88□□□□□ -2.27
MMP1P03956 AC048334.1-201ENST00000477975 159 ntBASIC0.88□□□□□ -2.27
MMP1P03956 AC117454.1-201ENST00000491120 168 ntBASIC0.88□□□□□ -2.27
MMP1P03956 UBL5P1-201ENST00000507979 193 ntBASIC0.88□□□□□ -2.27
MMP1P03956 AC136628.3-201ENST00000521868 290 ntBASIC0.88□□□□□ -2.27
MMP1P03956 DEFB108E-201ENST00000524692 240 ntBASIC0.88□□□□□ -2.27
MMP1P03956 AC127455.1-201ENST00000565496 145 ntBASIC0.88□□□□□ -2.27
MMP1P03956 AL356055.1-201ENST00000602528 446 ntBASIC0.88□□□□□ -2.27
MMP1P03956 AC013244.2-201ENST00000603396 103 ntBASIC0.88□□□□□ -2.27
MMP1P03956 RNU6-1187P-201ENST00000364771 110 ntBASIC0.87□□□□□ -2.27
MMP1P03956 SNORD50B-201ENST00000364995 70 ntBASIC0.87□□□□□ -2.27
MMP1P03956 Y_RNA.380-201ENST00000365663 111 ntBASIC0.87□□□□□ -2.27
MMP1P03956 RNU6-969P-201ENST00000383900 105 ntBASIC0.87□□□□□ -2.27
MMP1P03956 SNORA72.4-201ENST00000384174 132 ntBASIC0.87□□□□□ -2.27
MMP1P03956 RNU6-163P-201ENST00000384396 106 ntBASIC0.87□□□□□ -2.27
MMP1P03956 MIR193B-201ENST00000384907 83 ntBASIC0.87□□□□□ -2.27
MMP1P03956 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.87□□□□□ -2.27
MMP1P03956 SNORD12-201ENST00000391002 90 ntBASIC0.87□□□□□ -2.27
MMP1P03956 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.87□□□□□ -2.27
MMP1P03956 RPL21P38-201ENST00000418090 167 ntBASIC0.87□□□□□ -2.27
MMP1P03956 AC245047.7-201ENST00000440265 293 ntBASIC0.87□□□□□ -2.27
MMP1P03956 RNU7-141P-201ENST00000459304 62 ntBASIC0.87□□□□□ -2.27
MMP1P03956 AC131281.1-201ENST00000522984 164 ntBASIC0.87□□□□□ -2.27
MMP1P03956 AC133485.1-201ENST00000567176 124 ntBASIC0.87□□□□□ -2.27
MMP1P03956 AC138907.6-201ENST00000568401 126 ntBASIC0.87□□□□□ -2.27
MMP1P03956 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC0.87□□□□□ -2.27
MMP1P03956 AL355297.3-201ENST00000604082 446 ntBASIC0.87□□□□□ -2.27
MMP1P03956 MIR548AY-201ENST00000617669 107 ntBASIC0.87□□□□□ -2.27
MMP1P03956 RNU6-770P-201ENST00000363929 105 ntBASIC0.86□□□□□ -2.27
MMP1P03956 Y_RNA.210-201ENST00000364161 110 ntBASIC0.86□□□□□ -2.27
MMP1P03956 Y_RNA.276-201ENST00000364732 109 ntBASIC0.86□□□□□ -2.27
MMP1P03956 Y_RNA.336-201ENST00000365307 109 ntBASIC0.86□□□□□ -2.27
MMP1P03956 SNORA33.2-201ENST00000365413 134 ntBASIC0.86□□□□□ -2.27
MMP1P03956 RNU6-1227P-201ENST00000383981 107 ntBASIC0.86□□□□□ -2.27
MMP1P03956 Y_RNA.541-201ENST00000384640 113 ntBASIC0.86□□□□□ -2.27
MMP1P03956 AL451046.2-201ENST00000403074 277 ntBASIC0.86□□□□□ -2.27
MMP1P03956 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.86□□□□□ -2.27
MMP1P03956 MIR1298-201ENST00000408783 112 ntBASIC0.86□□□□□ -2.27
MMP1P03956 POLR2J4-204ENST00000418424 324 ntBASIC0.86□□□□□ -2.27
MMP1P03956 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.86□□□□□ -2.27
MMP1P03956 MTCO1P5-201ENST00000433573 344 ntBASIC0.86□□□□□ -2.27
MMP1P03956 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.86□□□□□ -2.27
MMP1P03956 RNU6-322P-201ENST00000516010 103 ntBASIC0.86□□□□□ -2.27
MMP1P03956 RNU6-764P-201ENST00000516396 105 ntBASIC0.86□□□□□ -2.27
MMP1P03956 RNU7-116P-201ENST00000516940 62 ntBASIC0.86□□□□□ -2.27
MMP1P03956 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.86□□□□□ -2.27
MMP1P03956 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC0.86□□□□□ -2.27
MMP1P03956 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.86□□□□□ -2.27
MMP1P03956 AC134026.1-201ENST00000623249 2239 ntBASIC0.85□□□□□ -2.27
MMP1P03956 RNU4-90P-201ENST00000362773 141 ntBASIC0.85□□□□□ -2.27
MMP1P03956 Y_RNA.203-201ENST00000364106 102 ntBASIC0.85□□□□□ -2.27
MMP1P03956 Y_RNA.363-201ENST00000365529 113 ntBASIC0.85□□□□□ -2.27
MMP1P03956 AC117470.1-201ENST00000381974 330 ntBASIC0.85□□□□□ -2.27
MMP1P03956 MIR1278-201ENST00000408753 81 ntBASIC0.85□□□□□ -2.27
MMP1P03956 MLLT10P1-201ENST00000418346 262 ntBASIC0.85□□□□□ -2.27
MMP1P03956 AC063976.4-201ENST00000421971 163 ntBASIC0.85□□□□□ -2.27
MMP1P03956 AC024067.1-201ENST00000426199 223 ntBASIC0.85□□□□□ -2.27
MMP1P03956 NDUFA4P2-201ENST00000489989 244 ntBASIC0.85□□□□□ -2.27
MMP1P03956 RPL23AP54-201ENST00000495129 419 ntBASIC0.85□□□□□ -2.27
MMP1P03956 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.85□□□□□ -2.27
MMP1P03956 SNORD79.1-201ENST00000516069 84 ntBASIC0.85□□□□□ -2.27
MMP1P03956 SNORD45.4-201ENST00000516629 73 ntBASIC0.85□□□□□ -2.27
MMP1P03956 AC090142.3-201ENST00000519012 385 ntBASIC0.85□□□□□ -2.27
MMP1P03956 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.85□□□□□ -2.27
MMP1P03956 MIR4661-201ENST00000582720 75 ntBASIC0.85□□□□□ -2.27
MMP1P03956 AC005357.1-201ENST00000588399 301 ntBASIC0.85□□□□□ -2.27
MMP1P03956 AC044792.1-201ENST00000593294 196 ntBASIC0.85□□□□□ -2.27
MMP1P03956 AL357312.1-201ENST00000603879 298 ntBASIC0.85□□□□□ -2.27
MMP1P03956 AL096861.1-201ENST00000610899 123 ntBASIC0.85□□□□□ -2.27
MMP1P03956 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.85□□□□□ -2.27
MMP1P03956 Y_RNA.19-201ENST00000362462 99 ntBASIC0.84□□□□□ -2.27
MMP1P03956 Y_RNA.64-201ENST00000362845 102 ntBASIC0.84□□□□□ -2.27
MMP1P03956 RNU6-1209P-201ENST00000363655 107 ntBASIC0.84□□□□□ -2.27
MMP1P03956 Y_RNA.202-201ENST00000364083 110 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 183.4 ms