| C3 | P01024 | AL117351.1-201 | ENST00000438864 | 766 nt | BASIC | -2.33 | □□□□□ -2.78 | | |
| C3 | P01024 | Y_RNA.679-201 | ENST00000516416 | 91 nt | BASIC | -2.33 | □□□□□ -2.78 | | |
| C3 | P01024 | AC018714.1-201 | ENST00000605028 | 208 nt | BASIC | -2.33 | □□□□□ -2.78 | | |
| C3 | P01024 | AC011373.1-201 | ENST00000607270 | 237 nt | BASIC | -2.33 | □□□□□ -2.78 | | |
| C3 | P01024 | AC139792.3-201 | ENST00000623525 | 224 nt | BASIC | -2.33 | □□□□□ -2.78 | | |
| C3 | P01024 | Y_RNA.223-201 | ENST00000364290 | 113 nt | BASIC | -2.34 | □□□□□ -2.78 | | |
| C3 | P01024 | MTND1P32-201 | ENST00000433043 | 938 nt | BASIC | -2.34 | □□□□□ -2.78 | | |
| C3 | P01024 | RNU7-51P-201 | ENST00000516560 | 62 nt | BASIC | -2.34 | □□□□□ -2.78 | | |
| C3 | P01024 | MTND1P5-201 | ENST00000517906 | 940 nt | BASIC | -2.34 | □□□□□ -2.78 | | |
| C3 | P01024 | DEFB131B-201 | ENST00000530210 | 213 nt | APPRIS P1 TSL 1 (best) BASIC | -2.34 | □□□□□ -2.78 | | |
| C3 | P01024 | RNU6-117P-201 | ENST00000365415 | 107 nt | BASIC | -2.34 | □□□□□ -2.78 | | |
| C3 | P01024 | RNU6-442P-201 | ENST00000383968 | 104 nt | BASIC | -2.34 | □□□□□ -2.78 | | |
| C3 | P01024 | AC008243.1-201 | ENST00000504955 | 389 nt | TSL 3 BASIC | -2.34 | □□□□□ -2.78 | | |
| C3 | P01024 | RNU6-1194P-201 | ENST00000516208 | 104 nt | BASIC | -2.34 | □□□□□ -2.78 | | |
| C3 | P01024 | SNORA63.5-201 | ENST00000363548 | 123 nt | BASIC | -2.35 | □□□□□ -2.79 | | |
| C3 | P01024 | Y_RNA.408-201 | ENST00000383987 | 102 nt | BASIC | -2.35 | □□□□□ -2.79 | | |
| C3 | P01024 | Y_RNA.517-201 | ENST00000384551 | 106 nt | BASIC | -2.35 | □□□□□ -2.79 | | |
| C3 | P01024 | AL008987.1-201 | ENST00000415528 | 237 nt | BASIC | -2.35 | □□□□□ -2.79 | | |
| C3 | P01024 | AL353813.1-201 | ENST00000440700 | 253 nt | BASIC | -2.35 | □□□□□ -2.79 | | |
| C3 | P01024 | AL158053.1-201 | ENST00000441503 | 453 nt | BASIC | -2.35 | □□□□□ -2.79 | | |
| C3 | P01024 | RNU6-1198P-201 | ENST00000516904 | 67 nt | BASIC | -2.35 | □□□□□ -2.79 | | |
| C3 | P01024 | AL136370.1-201 | ENST00000608166 | 691 nt | BASIC | -2.35 | □□□□□ -2.79 | | |
| C3 | P01024 | Y_RNA.184-201 | ENST00000363884 | 108 nt | BASIC | -2.36 | □□□□□ -2.79 | | |
| C3 | P01024 | RNU6-466P-201 | ENST00000391224 | 103 nt | BASIC | -2.36 | □□□□□ -2.79 | | |
| C3 | P01024 | AL606845.1-201 | ENST00000404881 | 255 nt | BASIC | -2.36 | □□□□□ -2.79 | | |
| C3 | P01024 | CEP57L1P1-201 | ENST00000430943 | 1201 nt | BASIC | -2.36 | □□□□□ -2.79 | | |
| C3 | P01024 | MTND1P27-201 | ENST00000451117 | 902 nt | BASIC | -2.36 | □□□□□ -2.79 | | |
| C3 | P01024 | AC024405.2-202 | ENST00000532731 | 184 nt | BASIC | -2.36 | □□□□□ -2.79 | | |
| C3 | P01024 | MIR6818-201 | ENST00000621576 | 65 nt | BASIC | -2.36 | □□□□□ -2.79 | | |
| C3 | P01024 | RNU1-141P-201 | ENST00000364623 | 158 nt | BASIC | -2.37 | □□□□□ -2.79 | | |
| C3 | P01024 | Y_RNA.426-201 | ENST00000384068 | 113 nt | BASIC | -2.37 | □□□□□ -2.79 | | |
| C3 | P01024 | RNU6-437P-201 | ENST00000459408 | 95 nt | BASIC | -2.37 | □□□□□ -2.79 | | |
| C3 | P01024 | LINC02064-202 | ENST00000507876 | 403 nt | TSL 5 BASIC | -2.37 | □□□□□ -2.79 | | |
| C3 | P01024 | BNIP3P39-201 | ENST00000601077 | 554 nt | BASIC | -2.37 | □□□□□ -2.79 | | |
| C3 | P01024 | AL450270.1-201 | ENST00000606160 | 391 nt | BASIC | -2.37 | □□□□□ -2.79 | | |
| C3 | P01024 | AC008536.2-201 | ENST00000607284 | 349 nt | BASIC | -2.37 | □□□□□ -2.79 | | |
| C3 | P01024 | AC069503.3-201 | ENST00000618674 | 145 nt | BASIC | -2.37 | □□□□□ -2.79 | | |
| C3 | P01024 | AC098614.3-201 | ENST00000438957 | 440 nt | BASIC | -2.37 | □□□□□ -2.79 | | |
| C3 | P01024 | LINC01491-201 | ENST00000558434 | 505 nt | TSL 3 BASIC | -2.37 | □□□□□ -2.79 | | |
| C3 | P01024 | YWHAEP2-201 | ENST00000580066 | 112 nt | BASIC | -2.37 | □□□□□ -2.79 | | |
| C3 | P01024 | AC093783.1-201 | ENST00000612976 | 329 nt | BASIC | -2.37 | □□□□□ -2.79 | | |
| C3 | P01024 | Y_RNA.110-201 | ENST00000363220 | 99 nt | BASIC | -2.38 | □□□□□ -2.79 | | |
| C3 | P01024 | RNU6-727P-201 | ENST00000363592 | 107 nt | BASIC | -2.38 | □□□□□ -2.79 | | |
| C3 | P01024 | SNORD14E-201 | ENST00000364009 | 85 nt | BASIC | -2.38 | □□□□□ -2.79 | | |
| C3 | P01024 | RNU6-1106P-201 | ENST00000390845 | 107 nt | BASIC | -2.38 | □□□□□ -2.79 | | |
| C3 | P01024 | AC004888.1-201 | ENST00000450480 | 547 nt | TSL 2 BASIC | -2.38 | □□□□□ -2.79 | | |
| C3 | P01024 | MT-ND1-201 | ENST00000361390 | 956 nt | APPRIS P1 BASIC | -2.39 | □□□□□ -2.79 | | |
| C3 | P01024 | RNU6-704P-201 | ENST00000364162 | 103 nt | BASIC | -2.39 | □□□□□ -2.79 | | |
| C3 | P01024 | RNU4-61P-201 | ENST00000411243 | 107 nt | BASIC | -2.39 | □□□□□ -2.79 | | |
| C3 | P01024 | RNU7-74P-201 | ENST00000459104 | 62 nt | BASIC | -2.39 | □□□□□ -2.79 | | |
| C3 | P01024 | SNORA25.17-201 | ENST00000517184 | 124 nt | BASIC | -2.39 | □□□□□ -2.79 | | |
| C3 | P01024 | SNORA40.17-201 | ENST00000517256 | 115 nt | BASIC | -2.39 | □□□□□ -2.79 | | |
| C3 | P01024 | 5S_rRNA.13-201 | ENST00000622298 | 123 nt | BASIC | -2.39 | □□□□□ -2.79 | | |
| C3 | P01024 | AC091912.2-201 | ENST00000624798 | 167 nt | BASIC | -2.39 | □□□□□ -2.79 | | |
| C3 | P01024 | OSBPL1A-217 | ENST00000638614 | 84 nt | TSL 5 BASIC | -2.39 | □□□□□ -2.79 | | |
| C3 | P01024 | MIR335-201 | ENST00000362173 | 94 nt | BASIC | -2.4 | □□□□□ -2.79 | | |
| C3 | P01024 | SNORA2.1-201 | ENST00000363089 | 137 nt | BASIC | -2.4 | □□□□□ -2.79 | | |
| C3 | P01024 | RNU6-154P-201 | ENST00000384306 | 106 nt | BASIC | -2.4 | □□□□□ -2.79 | | |
| C3 | P01024 | AL603914.1-201 | ENST00000401964 | 204 nt | BASIC | -2.4 | □□□□□ -2.79 | | |
| C3 | P01024 | RNY4-201 | ENST00000516507 | 96 nt | BASIC | -2.4 | □□□□□ -2.79 | | |
| C3 | P01024 | SNORA25.16-201 | ENST00000516741 | 121 nt | BASIC | -2.4 | □□□□□ -2.79 | | |
| C3 | P01024 | MTND1P24-201 | ENST00000552175 | 861 nt | BASIC | -2.4 | □□□□□ -2.79 | | |
| C3 | P01024 | AC092574.1-201 | ENST00000609771 | 420 nt | BASIC | -2.4 | □□□□□ -2.79 | | |
| C3 | P01024 | RNA5SP403-201 | ENST00000363598 | 108 nt | BASIC | -2.41 | □□□□□ -2.79 | | |
| C3 | P01024 | RNU6-1286P-201 | ENST00000383871 | 107 nt | BASIC | -2.41 | □□□□□ -2.79 | | |
| C3 | P01024 | MIR29B1-201 | ENST00000385015 | 81 nt | BASIC | -2.41 | □□□□□ -2.79 | | |
| C3 | P01024 | RPL30P16-201 | ENST00000419341 | 429 nt | BASIC | -2.41 | □□□□□ -2.79 | | |
| C3 | P01024 | RNU6-412P-201 | ENST00000516434 | 106 nt | BASIC | -2.41 | □□□□□ -2.79 | | |
| C3 | P01024 | MTND2P32-201 | ENST00000521584 | 1038 nt | BASIC | -2.41 | □□□□□ -2.79 | | |
| C3 | P01024 | AC009159.2-201 | ENST00000617603 | 606 nt | BASIC | -2.41 | □□□□□ -2.79 | | |
| C3 | P01024 | Y_RNA.244-201 | ENST00000364484 | 109 nt | BASIC | -2.41 | □□□□□ -2.8 | | |
| C3 | P01024 | Y_RNA.415-201 | ENST00000384012 | 112 nt | BASIC | -2.41 | □□□□□ -2.8 | | |
| C3 | P01024 | Y_RNA.598-201 | ENST00000410480 | 95 nt | BASIC | -2.41 | □□□□□ -2.8 | | |
| C3 | P01024 | AC018710.1-201 | ENST00000506509 | 158 nt | BASIC | -2.41 | □□□□□ -2.8 | | |
| C3 | P01024 | SNORA25.10-201 | ENST00000515926 | 124 nt | BASIC | -2.41 | □□□□□ -2.8 | | |
| C3 | P01024 | MTND1P35-201 | ENST00000526739 | 508 nt | BASIC | -2.41 | □□□□□ -2.8 | | |
| C3 | P01024 | AC012414.2-201 | ENST00000559474 | 187 nt | BASIC | -2.41 | □□□□□ -2.8 | | |
| C3 | P01024 | MIR3684-201 | ENST00000579779 | 74 nt | BASIC | -2.41 | □□□□□ -2.8 | | |
| C3 | P01024 | AC145423.2-201 | ENST00000610631 | 239 nt | BASIC | -2.41 | □□□□□ -2.8 | | |
| C3 | P01024 | RNU6-228P-201 | ENST00000362700 | 106 nt | BASIC | -2.42 | □□□□□ -2.8 | | |
| C3 | P01024 | RNU6-268P-201 | ENST00000364174 | 107 nt | BASIC | -2.42 | □□□□□ -2.8 | | |
| C3 | P01024 | RNY4P28-201 | ENST00000365281 | 93 nt | BASIC | -2.42 | □□□□□ -2.8 | | |
| C3 | P01024 | RNA5SP86-201 | ENST00000390869 | 98 nt | BASIC | -2.42 | □□□□□ -2.8 | | |
| C3 | P01024 | RNU6-588P-201 | ENST00000410281 | 105 nt | BASIC | -2.42 | □□□□□ -2.8 | | |
| C3 | P01024 | RNU2-29P-201 | ENST00000410423 | 189 nt | BASIC | -2.42 | □□□□□ -2.8 | | |
| C3 | P01024 | AP005120.1-201 | ENST00000579321 | 352 nt | TSL 3 BASIC | -2.42 | □□□□□ -2.8 | | |
| C3 | P01024 | RNU6-61P-201 | ENST00000365528 | 109 nt | BASIC | -2.43 | □□□□□ -2.8 | | |
| C3 | P01024 | Y_RNA.430-201 | ENST00000384081 | 110 nt | BASIC | -2.43 | □□□□□ -2.8 | | |
| C3 | P01024 | CoTC_ribozyme.1-201 | ENST00000408104 | 192 nt | BASIC | -2.43 | □□□□□ -2.8 | | |
| C3 | P01024 | RNA5SP237-201 | ENST00000410414 | 113 nt | BASIC | -2.43 | □□□□□ -2.8 | | |
| C3 | P01024 | U8.19-201 | ENST00000459095 | 133 nt | BASIC | -2.43 | □□□□□ -2.8 | | |
| C3 | P01024 | U8.22-201 | ENST00000459141 | 133 nt | BASIC | -2.43 | □□□□□ -2.8 | | |
| C3 | P01024 | MIR5708-201 | ENST00000579723 | 85 nt | BASIC | -2.43 | □□□□□ -2.8 | | |
| C3 | P01024 | AC005304.3-201 | ENST00000581533 | 511 nt | TSL 3 BASIC | -2.43 | □□□□□ -2.8 | | |
| C3 | P01024 | RMST_3.1-201 | ENST00000611651 | 109 nt | BASIC | -2.43 | □□□□□ -2.8 | | |
| C3 | P01024 | RNU2-8P-201 | ENST00000410727 | 190 nt | BASIC | -2.44 | □□□□□ -2.8 | | |
| C3 | P01024 | Y_RNA.678-201 | ENST00000516408 | 96 nt | BASIC | -2.44 | □□□□□ -2.8 | | |
| C3 | P01024 | RNU6-107P-201 | ENST00000516643 | 102 nt | BASIC | -2.44 | □□□□□ -2.8 | | |
| C3 | P01024 | HTN1-201 | ENST00000246896 | 580 nt | APPRIS P1 TSL 1 (best) BASIC | -2.44 | □□□□□ -2.8 | | |
| C3 | P01024 | RNU4-92P-201 | ENST00000363783 | 136 nt | BASIC | -2.44 | □□□□□ -2.8 | | |