| WNT9A | O14904 | SNORA31.15-201 | ENST00000516771 | 132 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| WNT9A | O14904 | SNORA31.25-201 | ENST00000517242 | 134 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| WNT9A | O14904 | MIR4709-201 | ENST00000577272 | 72 nt | BASIC | 2.34 | □□□□□ -2.03 | | |
| WNT9A | O14904 | STX7-202 | ENST00000367941 | 15791 nt | APPRIS P1 TSL 1 (best) BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | Y_RNA.336-201 | ENST00000365307 | 109 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | SNORD24-201 | ENST00000383884 | 75 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | Y_RNA.542-201 | ENST00000384641 | 111 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | MIR1289-2-201 | ENST00000408360 | 111 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNA5SP127-201 | ENST00000411051 | 133 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNA5SP450-201 | ENST00000411206 | 102 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RN7SKP192-201 | ENST00000411291 | 327 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AC005703.2-201 | ENST00000453339 | 343 nt | TSL 2 BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AC114811.1-201 | ENST00000507207 | 168 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU6-313P-201 | ENST00000516317 | 112 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | SUB1P4-201 | ENST00000566062 | 339 nt | BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | ZNF415-224 | ENST00000601493 | 2132 nt | TSL 1 (best) BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | SACS-201 | ENST00000382292 | 15324 nt | APPRIS P1 TSL 5 BASIC | 2.33 | □□□□□ -2.04 | | |
| WNT9A | O14904 | TDRD15-202 | ENST00000622654 | 5805 nt | APPRIS P1 BASIC | 2.32 | □□□□□ -2.04 | | |
| WNT9A | O14904 | MIR21-201 | ENST00000362134 | 72 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| WNT9A | O14904 | Y_RNA.66-201 | ENST00000362862 | 102 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| WNT9A | O14904 | MIR539-201 | ENST00000365690 | 78 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AL135790.1-201 | ENST00000427161 | 157 nt | TSL 3 BASIC | 2.32 | □□□□□ -2.04 | | |
| WNT9A | O14904 | MTND4LP9-201 | ENST00000427694 | 174 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU6-237P-201 | ENST00000515985 | 71 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNA5SP437-201 | ENST00000517249 | 129 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| WNT9A | O14904 | MIR5007-201 | ENST00000583098 | 95 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AC131055.1-201 | ENST00000584626 | 316 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| WNT9A | O14904 | Clostridiales-1.3-201 | ENST00000637703 | 147 nt | BASIC | 2.32 | □□□□□ -2.04 | | |
| WNT9A | O14904 | ZNF451-208 | ENST00000491832 | 3632 nt | APPRIS ALT2 TSL 1 (best) BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU6-112P-201 | ENST00000363599 | 104 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU6-915P-201 | ENST00000364943 | 103 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU1-138P-201 | ENST00000384093 | 164 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | SNORD38C-201 | ENST00000384381 | 69 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU6-1031P-201 | ENST00000384773 | 107 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU6-1168P-201 | ENST00000390831 | 104 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU6-1154P-201 | ENST00000391001 | 104 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | MIR548O-201 | ENST00000408583 | 114 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AL356320.1-201 | ENST00000429616 | 163 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | CALM2P4-201 | ENST00000430810 | 426 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU7-197P-201 | ENST00000458836 | 62 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | snoU13.27-201 | ENST00000459278 | 104 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU5E-3P-201 | ENST00000515913 | 68 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU7-12P-201 | ENST00000516030 | 62 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU6-1116P-201 | ENST00000517269 | 99 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AC007751.1-201 | ENST00000529260 | 376 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | MIR1273D-201 | ENST00000577266 | 86 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AL049779.4-201 | ENST00000604500 | 156 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AC034238.1-213 | ENST00000611148 | 150 nt | TSL 5 BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AC015726.2-201 | ENST00000620112 | 122 nt | BASIC | 2.31 | □□□□□ -2.04 | | |
| WNT9A | O14904 | CHST9-202 | ENST00000581714 | 2043 nt | APPRIS P1 TSL 1 (best) BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU6-888P-201 | ENST00000363010 | 101 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNA5SP393-201 | ENST00000363423 | 117 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT9A | O14904 | MIR504-201 | ENST00000385065 | 83 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AC008267.6-201 | ENST00000441664 | 139 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU6-971P-201 | ENST00000516920 | 106 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT9A | O14904 | IGKV3-31-201 | ENST00000523109 | 329 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AL160408.5-201 | ENST00000607759 | 526 nt | TSL 4 BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AC245884.12-201 | ENST00000615364 | 59 nt | BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT9A | O14904 | FGF7-201 | ENST00000267843 | 5467 nt | APPRIS P1 TSL 1 (best) BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT9A | O14904 | PRKD3-201 | ENST00000234179 | 5900 nt | APPRIS P1 TSL 1 (best) BASIC | 2.3 | □□□□□ -2.04 | | |
| WNT9A | O14904 | OR51A4-202 | ENST00000641898 | 4393 nt | APPRIS P1 BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT9A | O14904 | SNORA1-201 | ENST00000384107 | 130 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT9A | O14904 | MIR891A-201 | ENST00000401237 | 79 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT9A | O14904 | GHRL-208 | ENST00000439975 | 326 nt | TSL 1 (best) BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNA5SP168-201 | ENST00000516642 | 112 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT9A | O14904 | HMSD-204 | ENST00000526932 | 162 nt | TSL 3 BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT9A | O14904 | Y_RNA.757-201 | ENST00000578934 | 114 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AL365205.2-201 | ENST00000594586 | 68 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT9A | O14904 | U7.2-201 | ENST00000607576 | 63 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AC006441.5-201 | ENST00000612680 | 209 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AC068631.1-220 | ENST00000630726 | 256 nt | TSL 5 BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT9A | O14904 | GS1-279B7.1-204 | ENST00000641809 | 378 nt | BASIC | 2.29 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RGPD1-204 | ENST00000559485 | 5247 nt | APPRIS P2 TSL 1 (best) BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | FGF7-206 | ENST00000614567 | 3936 nt | APPRIS P1 TSL 1 (best) BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU6-1290P-201 | ENST00000362957 | 109 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU6-268P-201 | ENST00000364174 | 107 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | SNORA67.1-201 | ENST00000364749 | 141 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | SNORA22C-201 | ENST00000384614 | 134 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | MIR624-201 | ENST00000385217 | 97 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | MIR764-201 | ENST00000390811 | 85 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | U8.16-201 | ENST00000391279 | 133 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | SNORD23.1-201 | ENST00000408212 | 104 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AC108752.1-201 | ENST00000484679 | 576 nt | TSL 5 BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU7-25P-201 | ENST00000516544 | 62 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | RNU2-19P-201 | ENST00000517288 | 84 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | LINC01068-202 | ENST00000620874 | 626 nt | TSL 3 BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AP001340.1-201 | ENST00000624405 | 217 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | AC027279.3-201 | ENST00000625055 | 122 nt | BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | PLD1-217 | ENST00000627725 | 174 nt | TSL 5 BASIC | 2.28 | □□□□□ -2.04 | | |
| WNT9A | O14904 | SAGE1-201 | ENST00000324447 | 2952 nt | APPRIS P2 TSL 5 BASIC | 2.28 | □□□□□ -2.05 | | |
| WNT9A | O14904 | RNY1P11-201 | ENST00000363759 | 113 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT9A | O14904 | Y_RNA.251-201 | ENST00000364551 | 99 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT9A | O14904 | SNORA67.3-201 | ENST00000384366 | 140 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT9A | O14904 | RNU6-296P-201 | ENST00000384608 | 107 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT9A | O14904 | SNORA64-201 | ENST00000384674 | 134 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT9A | O14904 | MTATP6P21-201 | ENST00000440681 | 189 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT9A | O14904 | AC110009.1-201 | ENST00000512965 | 451 nt | TSL 5 BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT9A | O14904 | Y_RNA.692-201 | ENST00000516627 | 105 nt | BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT9A | O14904 | TRAV1-1-201 | ENST00000542354 | 392 nt | APPRIS P1 BASIC | 2.27 | □□□□□ -2.05 | | |
| WNT9A | O14904 | ZNFX1-AS1_2.1-201 | ENST00000610973 | 93 nt | BASIC | 2.27 | □□□□□ -2.05 | | |