Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 SNORA1.2-201ENST00000365189 134 ntBASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 RNU6-1104P-201ENST00000384723 104 ntBASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 MIR590-201ENST00000385008 97 ntBASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 Z96811.1-201ENST00000445880 108 ntBASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 RN7SL863P-201ENST00000462370 296 ntBASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 RNU2-35P-201ENST00000516446 142 ntBASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 ZNF861P-201ENST00000588126 639 ntBASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 AC002984.1-201ENST00000591692 448 ntBASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.43□□□□□ -1.86
LIMD1Q9UGP4 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 Y_RNA.220-201ENST00000364244 109 ntBASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 SNORD73B-201ENST00000364394 72 ntBASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 RNU1-91P-201ENST00000364746 163 ntBASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 SNORA48.8-201ENST00000391324 134 ntBASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 MIR1267-201ENST00000408723 78 ntBASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 ATP6V0E1P1-201ENST00000412537 226 ntBASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 RPS3AP1-201ENST00000413190 320 ntBASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 RNU6-904P-201ENST00000516206 101 ntBASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 RNA5SP137-201ENST00000516833 135 ntBASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 AC090821.2-201ENST00000523552 176 ntBASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 AC141557.1-201ENST00000540982 400 ntBASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 AC022523.2-201ENST00000561045 150 ntBASIC3.42□□□□□ -1.86
LIMD1Q9UGP4 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
LIMD1Q9UGP4 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
LIMD1Q9UGP4 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.41□□□□□ -1.86
LIMD1Q9UGP4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
LIMD1Q9UGP4 Y_RNA.299-201ENST00000364973 94 ntBASIC3.41□□□□□ -1.86
LIMD1Q9UGP4 RNA5SP144-201ENST00000410846 116 ntBASIC3.41□□□□□ -1.86
LIMD1Q9UGP4 SNORA31.10-201ENST00000516482 106 ntBASIC3.41□□□□□ -1.86
LIMD1Q9UGP4 RNU7-6P-201ENST00000516845 62 ntBASIC3.41□□□□□ -1.86
LIMD1Q9UGP4 RNU6-1116P-201ENST00000517269 99 ntBASIC3.41□□□□□ -1.86
LIMD1Q9UGP4 MIR5094-201ENST00000578766 85 ntBASIC3.41□□□□□ -1.86
LIMD1Q9UGP4 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
LIMD1Q9UGP4 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.4□□□□□ -1.86
LIMD1Q9UGP4 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.86
LIMD1Q9UGP4 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 Y_RNA.93-201ENST00000363066 109 ntBASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 RNU4-36P-201ENST00000364294 144 ntBASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 RNU4-16P-201ENST00000364737 141 ntBASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 SNORA70.7-201ENST00000384159 133 ntBASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 Y_RNA.507-201ENST00000384500 99 ntBASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 RNU6-844P-201ENST00000517175 102 ntBASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 AC026333.2-201ENST00000542164 106 ntBASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 AC021613.1-201ENST00000623880 111 ntBASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC3.4□□□□□ -1.87
LIMD1Q9UGP4 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 MIR30E-201ENST00000362104 92 ntBASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 RNU6-816P-201ENST00000390914 107 ntBASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 RNU6-1268P-201ENST00000391214 107 ntBASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 RNU6-1239P-201ENST00000391310 107 ntBASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 BX510359.4-201ENST00000423750 193 ntBASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 FAM71BP1-201ENST00000604431 523 ntBASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 HOTAIRM1_4.1-201ENST00000617934 102 ntBASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 FAM35CP-201ENST00000554755 2470 ntBASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.39□□□□□ -1.87
LIMD1Q9UGP4 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 RNU6-661P-201ENST00000362409 107 ntBASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 SNORA38-201ENST00000363946 132 ntBASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 SNORA63D-201ENST00000364359 132 ntBASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 MIR452-201ENST00000385020 85 ntBASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 RNA5SP465-201ENST00000391195 109 ntBASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 MTATP8P2-201ENST00000435212 202 ntBASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 UBL5P3-201ENST00000475112 231 ntBASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 AC008885.1-201ENST00000514930 301 ntBASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 AC022149.2-201ENST00000621061 203 ntBASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
LIMD1Q9UGP4 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 RNU11-3P-201ENST00000391111 133 ntBASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 RPS23P4-201ENST00000487908 423 ntBASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 RNU6-109P-201ENST00000516364 107 ntBASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 RNU6-184P-201ENST00000516514 107 ntBASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 DEFB131E-201ENST00000532329 154 ntBASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 MIR3152-201ENST00000579801 74 ntBASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 UBL5P2-201ENST00000583788 219 ntBASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 HSPE1P19-201ENST00000603327 295 ntBASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 AC068631.1-220ENST00000630726 256 ntTSL 5 BASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 MIR7153-201ENST00000637758 57 ntBASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.37□□□□□ -1.87
LIMD1Q9UGP4 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 AC108206.1-201ENST00000570186 4159 ntBASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
LIMD1Q9UGP4 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms