Protein–RNA interactions for Protein: Q9H9Y2

RPF1, Ribosome production factor 1, humanhuman

Known RBP Predictions only

Length 349 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPF1Q9H9Y2 RNU7-116P-201ENST00000516940 62 ntBASIC1.15□□□□□ -2.23
RPF1Q9H9Y2 AC127455.1-201ENST00000565496 145 ntBASIC1.15□□□□□ -2.23
RPF1Q9H9Y2 SNORD114-21-201ENST00000606412 72 ntBASIC1.15□□□□□ -2.23
RPF1Q9H9Y2 MIR548AY-201ENST00000617669 107 ntBASIC1.15□□□□□ -2.23
RPF1Q9H9Y2 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 snoU2_19.2-201ENST00000363024 80 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.118-201ENST00000363300 101 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 SNORD50B-201ENST00000364995 70 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.355-201ENST00000365462 98 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.455-201ENST00000384230 98 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 MIR215-201ENST00000384858 110 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 MIR1298-201ENST00000408783 112 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 SNRPGP10-201ENST00000432323 225 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 LINC01399-202ENST00000458450 244 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 RNU7-141P-201ENST00000459304 62 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 AC048334.1-201ENST00000477975 159 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 RPL23AP54-201ENST00000495129 419 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 RNU6-947P-201ENST00000516264 106 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 RNU7-40P-201ENST00000516397 64 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 SNORD45.4-201ENST00000516629 73 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 AC136628.3-201ENST00000521868 290 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 AC131281.1-201ENST00000522984 164 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 AL356055.1-201ENST00000602528 446 ntBASIC1.14□□□□□ -2.23
RPF1Q9H9Y2 AC134026.1-201ENST00000623249 2239 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.153-201ENST00000363615 91 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.203-201ENST00000364106 102 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.210-201ENST00000364161 110 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.380-201ENST00000365663 111 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 SNORA72.4-201ENST00000384174 132 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 SNORA25-201ENST00000384384 134 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 MIR516B2-201ENST00000385190 85 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.581-201ENST00000391017 97 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 MIR1278-201ENST00000408753 81 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 RPL21P38-201ENST00000418090 167 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 RNU6-322P-201ENST00000516010 103 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 SNORD116-28-201ENST00000516123 91 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 RNU6-764P-201ENST00000516396 105 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 RNA5SP404-201ENST00000517118 132 ntBASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.13□□□□□ -2.23
RPF1Q9H9Y2 MIR96-201ENST00000362288 78 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 RNU4-90P-201ENST00000362773 141 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.136-201ENST00000363444 102 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 RNU6-770P-201ENST00000363929 105 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.336-201ENST00000365307 109 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 RNU6-131P-201ENST00000391144 107 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 MTCO1P5-201ENST00000433573 344 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 snoU13.25-201ENST00000458945 104 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 SNORA31.2-201ENST00000516019 134 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 RNA5SP220-201ENST00000516298 104 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 AC090142.3-201ENST00000519012 385 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 AL355297.3-201ENST00000604082 446 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 AL022345.2-201ENST00000606307 135 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 BX284668.6-201ENST00000606899 438 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 AL096861.1-201ENST00000610899 123 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 AC027335.2-201ENST00000624030 375 ntBASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.12□□□□□ -2.23
RPF1Q9H9Y2 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 AC068700.1-201ENST00000565862 3754 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.19-201ENST00000362462 99 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 RNU6-1084P-201ENST00000362498 107 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 RNU6-1209P-201ENST00000363655 107 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 RNU1-124P-201ENST00000363861 145 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.796-201ENST00000364268 102 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.799-201ENST00000364992 102 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 AC117470.1-201ENST00000381974 330 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 RNU6-969P-201ENST00000383900 105 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.541-201ENST00000384640 113 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.569-201ENST00000384749 103 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 MIR452-201ENST00000385020 85 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 SNORA36B-201ENST00000410438 131 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 RNU6-1054P-201ENST00000411293 104 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 RPS29P28-201ENST00000446439 141 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 RPS23P4-201ENST00000487908 423 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 NDUFA4P2-201ENST00000489989 244 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 MRPS35P2-201ENST00000508242 191 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 RNY3P15-201ENST00000516297 97 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 SNORA40.15-201ENST00000516884 107 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 AC005357.1-201ENST00000588399 301 ntBASIC1.11□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.64-201ENST00000362845 102 ntBASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.202-201ENST00000364083 110 ntBASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 SNORA33.2-201ENST00000365413 134 ntBASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 Y_RNA.363-201ENST00000365529 113 ntBASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 RNU6-42P-201ENST00000384165 107 ntBASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 MIR222-201ENST00000384992 110 ntBASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 RNU6-763P-201ENST00000390865 106 ntBASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 MTCO2P33-201ENST00000402100 465 ntBASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 snoU13.18-201ENST00000459483 104 ntBASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 MIR3192-201ENST00000584920 77 ntBASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.1□□□□□ -2.23
RPF1Q9H9Y2 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC1.09□□□□□ -2.23
RPF1Q9H9Y2 RNU4-38P-201ENST00000364472 129 ntBASIC1.09□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 194.6 ms