Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RPL23AP63-201ENST00000498752 471 ntBASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 RNA5SP153-201ENST00000516498 76 ntBASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 RNU2-19P-201ENST00000517288 84 ntBASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 MIR5002-201ENST00000584713 97 ntBASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.33□□□□□ -2.04
PCIF1Q9H4Z3 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.32□□□□□ -2.04
PCIF1Q9H4Z3 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.32□□□□□ -2.04
PCIF1Q9H4Z3 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
PCIF1Q9H4Z3 SNORA70B-201ENST00000384210 135 ntBASIC2.32□□□□□ -2.04
PCIF1Q9H4Z3 MIR520A-201ENST00000384862 85 ntBASIC2.32□□□□□ -2.04
PCIF1Q9H4Z3 RNU2-70P-201ENST00000410718 179 ntBASIC2.32□□□□□ -2.04
PCIF1Q9H4Z3 AL356320.1-201ENST00000429616 163 ntBASIC2.32□□□□□ -2.04
PCIF1Q9H4Z3 AC055731.1-201ENST00000474387 401 ntBASIC2.32□□□□□ -2.04
PCIF1Q9H4Z3 MIR4662B-201ENST00000579498 81 ntBASIC2.32□□□□□ -2.04
PCIF1Q9H4Z3 MIR378D2-201ENST00000580636 98 ntBASIC2.32□□□□□ -2.04
PCIF1Q9H4Z3 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.32□□□□□ -2.04
PCIF1Q9H4Z3 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.32□□□□□ -2.04
PCIF1Q9H4Z3 Y_RNA.215-201ENST00000364204 112 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 RNU6-978P-201ENST00000364371 103 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 Y_RNA.393-201ENST00000383936 102 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 SNORD23.1-201ENST00000408212 104 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 RNA5SP100-201ENST00000410903 110 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 RNA5SP59-201ENST00000410922 110 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 RN7SKP192-201ENST00000411291 327 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 RNU7-28P-201ENST00000516759 62 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 MIR1273D-201ENST00000577266 86 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 AC104984.5-201ENST00000586878 94 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 AC087685.1-201ENST00000587507 141 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 AC120024.3-201ENST00000603167 156 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.31□□□□□ -2.04
PCIF1Q9H4Z3 SNORA67.1-201ENST00000364749 141 ntBASIC2.3□□□□□ -2.04
PCIF1Q9H4Z3 SNORD50B-201ENST00000364995 70 ntBASIC2.3□□□□□ -2.04
PCIF1Q9H4Z3 Y_RNA.521-201ENST00000384560 114 ntBASIC2.3□□□□□ -2.04
PCIF1Q9H4Z3 SNORA48.3-201ENST00000391081 134 ntBASIC2.3□□□□□ -2.04
PCIF1Q9H4Z3 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.3□□□□□ -2.04
PCIF1Q9H4Z3 RNU2-7P-201ENST00000410794 178 ntBASIC2.3□□□□□ -2.04
PCIF1Q9H4Z3 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC2.3□□□□□ -2.04
PCIF1Q9H4Z3 U1.36-201ENST00000620684 176 ntBASIC2.3□□□□□ -2.04
PCIF1Q9H4Z3 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.3□□□□□ -2.04
PCIF1Q9H4Z3 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.3□□□□□ -2.04
PCIF1Q9H4Z3 Y_RNA.66-201ENST00000362862 102 ntBASIC2.29□□□□□ -2.04
PCIF1Q9H4Z3 Y_RNA.488-201ENST00000384403 102 ntBASIC2.29□□□□□ -2.04
PCIF1Q9H4Z3 MIR524-201ENST00000385242 87 ntBASIC2.29□□□□□ -2.04
PCIF1Q9H4Z3 RN7SKP200-201ENST00000410564 320 ntBASIC2.29□□□□□ -2.04
PCIF1Q9H4Z3 Y_RNA.714-201ENST00000517065 90 ntBASIC2.29□□□□□ -2.04
PCIF1Q9H4Z3 SNORA28-201ENST00000606769 126 ntBASIC2.29□□□□□ -2.04
PCIF1Q9H4Z3 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
PCIF1Q9H4Z3 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 MIRLET7C-201ENST00000362160 84 ntBASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 U8.2-201ENST00000363156 134 ntBASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 SNORA16B-201ENST00000364674 135 ntBASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 RNU6-597P-201ENST00000365620 102 ntBASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 RNU6-1336P-201ENST00000383886 109 ntBASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 MIR569-201ENST00000385228 96 ntBASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 CYCSP49-201ENST00000420810 319 ntBASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 RNU6-426P-201ENST00000516464 97 ntBASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 RNU6-126P-201ENST00000516685 103 ntBASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 MIR3910-1-201ENST00000580936 111 ntBASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC2.28□□□□□ -2.04
PCIF1Q9H4Z3 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-950P-201ENST00000384651 107 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-1031P-201ENST00000384773 107 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 MIR613-201ENST00000385248 95 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 SNORD37.2-201ENST00000391075 66 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 SNORA26-201ENST00000391286 122 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 CALM2P4-201ENST00000430810 426 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 RNU7-34P-201ENST00000459394 64 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 SNORA25.12-201ENST00000516202 82 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-406P-201ENST00000516470 107 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 SNORA31.17-201ENST00000516953 127 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-365P-201ENST00000517113 106 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-1116P-201ENST00000517269 99 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 AC007751.1-201ENST00000529260 376 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 MIR4446-201ENST00000578505 67 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 Y_RNA.783-201ENST00000613546 102 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 MIR6844-201ENST00000637122 62 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.27□□□□□ -2.05
PCIF1Q9H4Z3 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-199P-201ENST00000362954 107 ntBASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 RNY1P11-201ENST00000363759 113 ntBASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-704P-201ENST00000364162 103 ntBASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 RNU6-1082P-201ENST00000364574 107 ntBASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 RNA5SP160-201ENST00000364866 120 ntBASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 snoU2-30.1-201ENST00000365012 70 ntBASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 AL034345.1-201ENST00000407768 123 ntBASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 RNA5SP272-201ENST00000516095 111 ntBASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 Y_RNA.666-201ENST00000516187 112 ntBASIC2.26□□□□□ -2.05
PCIF1Q9H4Z3 SNORD45.4-201ENST00000516629 73 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 112.5 ms