Protein–RNA interactions for Protein: Q9BRR0

ZKSCAN3, Zinc finger protein with KRAB and SCAN domains 3, humanhuman

Predictions only

Length 538 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZKSCAN3Q9BRR0 RNA5SP320-201ENST00000516263 124 ntBASIC3.01□□□□□ -1.93
ZKSCAN3Q9BRR0 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC3.01□□□□□ -1.93
ZKSCAN3Q9BRR0 MIR6733-201ENST00000635723 61 ntBASIC3.01□□□□□ -1.93
ZKSCAN3Q9BRR0 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3□□□□□ -1.93
ZKSCAN3Q9BRR0 RNU6-1084P-201ENST00000362498 107 ntBASIC3□□□□□ -1.93
ZKSCAN3Q9BRR0 RNA5SP482-201ENST00000391269 118 ntBASIC3□□□□□ -1.93
ZKSCAN3Q9BRR0 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3□□□□□ -1.93
ZKSCAN3Q9BRR0 MIR376A2-201ENST00000636782 80 ntBASIC3□□□□□ -1.93
ZKSCAN3Q9BRR0 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 RNU6-23P-201ENST00000363283 107 ntBASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 Y_RNA.116-201ENST00000363292 103 ntBASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 RNU6-1255P-201ENST00000363434 112 ntBASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 Y_RNA.281-201ENST00000364774 94 ntBASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 Y_RNA.366-201ENST00000365540 102 ntBASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 RNU6-1189P-201ENST00000383958 107 ntBASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 RPS26P48-201ENST00000491713 339 ntBASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 RNU7-28P-201ENST00000516759 62 ntBASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 AC026271.5-201ENST00000577873 130 ntBASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 MIR3169-201ENST00000578032 83 ntBASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.99□□□□□ -1.93
ZKSCAN3Q9BRR0 SNORD115-28-201ENST00000363931 81 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 Y_RNA.336-201ENST00000365307 109 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 RNU6-32P-201ENST00000383948 107 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 RNU6-13P-201ENST00000384248 107 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 RNU6-12P-201ENST00000384604 107 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 RNU6-41P-201ENST00000384741 107 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 SNORA11.4-201ENST00000408823 129 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 AC245047.3-201ENST00000429428 127 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 RNU7-25P-201ENST00000516544 62 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 RNU6-56P-201ENST00000516986 93 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 AC004486.1-201ENST00000546846 233 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 AC007012.1-201ENST00000567192 175 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 uc_338.28-201ENST00000612082 187 ntBASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.98□□□□□ -1.93
ZKSCAN3Q9BRR0 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.97□□□□□ -1.93
ZKSCAN3Q9BRR0 MIR449A-201ENST00000362113 91 ntBASIC2.97□□□□□ -1.93
ZKSCAN3Q9BRR0 RNU6-268P-201ENST00000364174 107 ntBASIC2.97□□□□□ -1.93
ZKSCAN3Q9BRR0 SNORA2.2-201ENST00000365473 135 ntBASIC2.97□□□□□ -1.93
ZKSCAN3Q9BRR0 MIR627-201ENST00000384979 97 ntBASIC2.97□□□□□ -1.93
ZKSCAN3Q9BRR0 SNRPGP14-201ENST00000435400 219 ntBASIC2.97□□□□□ -1.93
ZKSCAN3Q9BRR0 AC099677.2-201ENST00000436385 175 ntBASIC2.97□□□□□ -1.93
ZKSCAN3Q9BRR0 HMGN2P32-201ENST00000444648 269 ntBASIC2.97□□□□□ -1.93
ZKSCAN3Q9BRR0 SNORD45.4-201ENST00000516629 73 ntBASIC2.97□□□□□ -1.93
ZKSCAN3Q9BRR0 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.97□□□□□ -1.93
ZKSCAN3Q9BRR0 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.97□□□□□ -1.93
ZKSCAN3Q9BRR0 AC245060.5-201ENST00000610778 3293 ntBASIC2.97□□□□□ -1.93
ZKSCAN3Q9BRR0 Y_RNA.265-201ENST00000364677 108 ntBASIC2.96□□□□□ -1.94
ZKSCAN3Q9BRR0 Y_RNA.495-201ENST00000384435 112 ntBASIC2.96□□□□□ -1.94
ZKSCAN3Q9BRR0 Y_RNA.500-201ENST00000384466 111 ntBASIC2.96□□□□□ -1.94
ZKSCAN3Q9BRR0 MIR27B-201ENST00000385129 97 ntBASIC2.96□□□□□ -1.94
ZKSCAN3Q9BRR0 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.96□□□□□ -1.94
ZKSCAN3Q9BRR0 MIR887-201ENST00000401258 79 ntBASIC2.96□□□□□ -1.94
ZKSCAN3Q9BRR0 RN7SL499P-201ENST00000481141 276 ntBASIC2.96□□□□□ -1.94
ZKSCAN3Q9BRR0 Y_RNA.694-201ENST00000516677 117 ntBASIC2.96□□□□□ -1.94
ZKSCAN3Q9BRR0 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.95□□□□□ -1.94
ZKSCAN3Q9BRR0 ZNF720P1-201ENST00000562403 1939 ntBASIC2.95□□□□□ -1.94
ZKSCAN3Q9BRR0 MIR450A1-201ENST00000362262 91 ntBASIC2.95□□□□□ -1.94
ZKSCAN3Q9BRR0 Y_RNA.37-201ENST00000362606 108 ntBASIC2.95□□□□□ -1.94
ZKSCAN3Q9BRR0 RNU6-1107P-201ENST00000364817 104 ntBASIC2.95□□□□□ -1.94
ZKSCAN3Q9BRR0 Y_RNA.547-201ENST00000384654 119 ntBASIC2.95□□□□□ -1.94
ZKSCAN3Q9BRR0 AL445646.1-201ENST00000431784 216 ntBASIC2.95□□□□□ -1.94
ZKSCAN3Q9BRR0 Z96811.1-201ENST00000445880 108 ntBASIC2.95□□□□□ -1.94
ZKSCAN3Q9BRR0 RNU6-240P-201ENST00000516098 97 ntBASIC2.95□□□□□ -1.94
ZKSCAN3Q9BRR0 RNU7-70P-201ENST00000516941 66 ntBASIC2.95□□□□□ -1.94
ZKSCAN3Q9BRR0 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.95□□□□□ -1.94
ZKSCAN3Q9BRR0 Y_RNA.85-201ENST00000363014 111 ntBASIC2.94□□□□□ -1.94
ZKSCAN3Q9BRR0 SNORA80E-201ENST00000384744 137 ntBASIC2.94□□□□□ -1.94
ZKSCAN3Q9BRR0 SNORD12C-201ENST00000386307 89 ntBASIC2.94□□□□□ -1.94
ZKSCAN3Q9BRR0 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.94□□□□□ -1.94
ZKSCAN3Q9BRR0 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.94□□□□□ -1.94
ZKSCAN3Q9BRR0 RPS29P24-201ENST00000486345 171 ntBASIC2.94□□□□□ -1.94
ZKSCAN3Q9BRR0 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.94□□□□□ -1.94
ZKSCAN3Q9BRR0 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.94□□□□□ -1.94
ZKSCAN3Q9BRR0 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
ZKSCAN3Q9BRR0 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
ZKSCAN3Q9BRR0 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
ZKSCAN3Q9BRR0 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.93□□□□□ -1.94
ZKSCAN3Q9BRR0 OXR1-215ENST00000531443 3599 ntTSL 5 BASIC2.93□□□□□ -1.94
ZKSCAN3Q9BRR0 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
ZKSCAN3Q9BRR0 RNU6-690P-201ENST00000365242 106 ntBASIC2.93□□□□□ -1.94
ZKSCAN3Q9BRR0 RNU6-106P-201ENST00000384405 107 ntBASIC2.93□□□□□ -1.94
ZKSCAN3Q9BRR0 MIR29C-201ENST00000385231 88 ntBASIC2.93□□□□□ -1.94
ZKSCAN3Q9BRR0 AL606517.2-201ENST00000442855 241 ntBASIC2.93□□□□□ -1.94
ZKSCAN3Q9BRR0 AC104389.3-201ENST00000445629 235 ntBASIC2.93□□□□□ -1.94
ZKSCAN3Q9BRR0 RPL23AP94-201ENST00000512518 302 ntBASIC2.93□□□□□ -1.94
ZKSCAN3Q9BRR0 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC2.93□□□□□ -1.94
ZKSCAN3Q9BRR0 AC005786.1-201ENST00000588553 154 ntBASIC2.93□□□□□ -1.94
ZKSCAN3Q9BRR0 Y_RNA.198-201ENST00000364013 98 ntBASIC2.92□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 165.6 ms