Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 MIR891A-201ENST00000401237 79 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 MIR548F4-201ENST00000408515 105 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 RPL21P38-201ENST00000418090 167 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 RPS29P23-201ENST00000458635 123 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 RNU7-12P-201ENST00000516030 62 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 AL160236.1-201ENST00000556317 195 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 AC120024.3-201ENST00000603167 156 ntBASIC1.29□□□□□ -2.2
CCDC3Q9BQI4 MIR215-201ENST00000384858 110 ntBASIC1.28□□□□□ -2.2
CCDC3Q9BQI4 RNU6-1203P-201ENST00000410703 110 ntBASIC1.28□□□□□ -2.2
CCDC3Q9BQI4 Y_RNA.621-201ENST00000411065 96 ntBASIC1.28□□□□□ -2.2
CCDC3Q9BQI4 AC113618.1-201ENST00000416747 285 ntBASIC1.28□□□□□ -2.2
CCDC3Q9BQI4 MTND5P22-201ENST00000458380 195 ntBASIC1.28□□□□□ -2.2
CCDC3Q9BQI4 RNU7-141P-201ENST00000459304 62 ntBASIC1.28□□□□□ -2.2
CCDC3Q9BQI4 AC004223.1-201ENST00000479840 271 ntBASIC1.28□□□□□ -2.2
CCDC3Q9BQI4 SNORA27.4-201ENST00000516650 95 ntBASIC1.28□□□□□ -2.2
CCDC3Q9BQI4 MIR3664-201ENST00000579074 99 ntBASIC1.28□□□□□ -2.2
CCDC3Q9BQI4 MIR5688-201ENST00000580619 83 ntBASIC1.28□□□□□ -2.2
CCDC3Q9BQI4 AL512605.2-201ENST00000592972 256 ntBASIC1.28□□□□□ -2.2
CCDC3Q9BQI4 AL365434.2-201ENST00000607979 234 ntBASIC1.28□□□□□ -2.2
CCDC3Q9BQI4 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 MIR335-201ENST00000362173 94 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 Y_RNA.26-201ENST00000362539 101 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 Y_RNA.191-201ENST00000363972 113 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 Y_RNA.796-201ENST00000364268 102 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 Y_RNA.799-201ENST00000364992 102 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 SNORD26-201ENST00000384147 75 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 SNORA40.6-201ENST00000391153 128 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 SNORA26.5-201ENST00000391215 123 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 SNORA36B-201ENST00000410438 131 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 AC117454.1-201ENST00000491120 168 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 SERF1AP1-201ENST00000514575 187 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 AL512310.8-201ENST00000550183 120 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 MIR3937-201ENST00000580135 106 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 MIR3660-201ENST00000584845 100 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CCDC3Q9BQI4 SNORA25.1-201ENST00000362326 128 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 Y_RNA.217-201ENST00000364214 105 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 Y_RNA.336-201ENST00000365307 109 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 RNU2-14P-201ENST00000411053 191 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 DYNLT3P2-201ENST00000442517 295 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 HMGN2P32-201ENST00000444648 269 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 RNU6-437P-201ENST00000459408 95 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 Y_RNA.641-201ENST00000459414 105 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 Y_RNA.637-201ENST00000459424 114 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 AC092991.1-201ENST00000477176 376 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 RPL23AP54-201ENST00000495129 419 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 RNU6-322P-201ENST00000516010 103 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 RNU6-1338P-201ENST00000516328 91 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 RNA5SP61-201ENST00000516453 100 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 AL117187.1-201ENST00000555482 181 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 MIR4452-201ENST00000583004 71 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 U6.104-201ENST00000637979 90 ntBASIC1.26□□□□□ -2.21
CCDC3Q9BQI4 RNU6-1272P-201ENST00000362776 107 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 SNORD68-201ENST00000363214 84 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 Y_RNA.242-201ENST00000364473 110 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 RNU6-514P-201ENST00000384208 107 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 MIR452-201ENST00000385020 85 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 SNRPGP10-201ENST00000432323 225 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 AC091959.1-201ENST00000495857 238 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 RNU6-1007P-201ENST00000516586 107 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 AC008269.2-201ENST00000561915 1105 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 MIR4778-201ENST00000577635 80 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 GHRLOS.1-201ENST00000610995 70 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 AC013791.1-201ENST00000616619 62 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 MIR8062-201ENST00000621515 85 ntBASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.25□□□□□ -2.21
CCDC3Q9BQI4 snoU2-30.1-201ENST00000365012 70 ntBASIC1.24□□□□□ -2.21
CCDC3Q9BQI4 RNU6-163P-201ENST00000384396 106 ntBASIC1.24□□□□□ -2.21
CCDC3Q9BQI4 MIR758-201ENST00000390227 88 ntBASIC1.24□□□□□ -2.21
CCDC3Q9BQI4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.24□□□□□ -2.21
CCDC3Q9BQI4 RNU6-763P-201ENST00000390865 106 ntBASIC1.24□□□□□ -2.21
CCDC3Q9BQI4 RNU6-131P-201ENST00000391144 107 ntBASIC1.24□□□□□ -2.21
CCDC3Q9BQI4 AC114811.1-201ENST00000507207 168 ntBASIC1.24□□□□□ -2.21
CCDC3Q9BQI4 SNORD45.4-201ENST00000516629 73 ntBASIC1.24□□□□□ -2.21
CCDC3Q9BQI4 AC019176.1-201ENST00000518519 225 ntBASIC1.24□□□□□ -2.21
CCDC3Q9BQI4 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.24□□□□□ -2.21
CCDC3Q9BQI4 AL357312.1-201ENST00000603879 298 ntBASIC1.24□□□□□ -2.21
CCDC3Q9BQI4 MIR26B-201ENST00000362251 77 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 RNU6-1209P-201ENST00000363655 107 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 Y_RNA.176-201ENST00000363815 109 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 RNU6-713P-201ENST00000384761 107 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 Y_RNA.574-201ENST00000384766 95 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 AL451046.2-201ENST00000403074 277 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 AL358176.2-201ENST00000425769 204 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 TRBVB-201ENST00000477100 408 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 RNU6-917P-201ENST00000516294 104 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 AC005357.1-201ENST00000588399 301 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 AC136443.5-201ENST00000603741 370 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 AP001282.2-201ENST00000616149 309 ntBASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.23□□□□□ -2.21
CCDC3Q9BQI4 RNU6-1048P-201ENST00000364054 107 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 SNORD114-22-201ENST00000365423 72 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 Y_RNA.376-201ENST00000365638 108 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 MIR15B-201ENST00000385045 98 ntBASIC1.22□□□□□ -2.21
CCDC3Q9BQI4 MIR150-201ENST00000385048 84 ntBASIC1.22□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 12.7 ms