Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 SNORD79.1-201ENST00000516069 84 ntBASIC0.98□□□□□ -2.25
SSX3Q99909 SNORA74.3-201ENST00000517108 154 ntBASIC0.98□□□□□ -2.25
SSX3Q99909 AC136628.3-201ENST00000521868 290 ntBASIC0.98□□□□□ -2.25
SSX3Q99909 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.98□□□□□ -2.25
SSX3Q99909 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.98□□□□□ -2.25
SSX3Q99909 AC104695.3-201ENST00000604052 296 ntBASIC0.98□□□□□ -2.25
SSX3Q99909 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.98□□□□□ -2.25
SSX3Q99909 MTND4P29-201ENST00000503122 1372 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 Y_RNA.61-201ENST00000362835 102 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 Y_RNA.128-201ENST00000363391 112 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 RNU6-53P-201ENST00000365367 106 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 Y_RNA.363-201ENST00000365529 113 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 Y_RNA.535-201ENST00000384612 99 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 AL591704.2-201ENST00000421658 181 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 RNU7-141P-201ENST00000459304 62 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 SNORA18.7-201ENST00000516910 131 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 RNU6-897P-201ENST00000517135 105 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 MIR2681-201ENST00000581814 105 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 MIR3192-201ENST00000584920 77 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 RAC1P9-201ENST00000604990 392 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 AC103810.9-201ENST00000606688 112 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 MIR8070-201ENST00000616510 88 ntBASIC0.97□□□□□ -2.25
SSX3Q99909 AL391516.1-201ENST00000554380 2449 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 RNU6-1209P-201ENST00000363655 107 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 RNU6-1048P-201ENST00000364054 107 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 Y_RNA.222-201ENST00000364264 102 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 SNORA72.4-201ENST00000384174 132 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 MIR520C-201ENST00000385005 87 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 MIR802-201ENST00000390235 94 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 MIR1252-201ENST00000408861 65 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 SNORA36B-201ENST00000410438 131 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 AC002429.1-201ENST00000437672 148 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 AC245047.8-201ENST00000456455 284 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 RNU6-437P-201ENST00000459408 95 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 SNORD124-201ENST00000459577 104 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 AC087685.1-201ENST00000587507 141 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 AL391903.3-201ENST00000612158 163 ntBASIC0.96□□□□□ -2.26
SSX3Q99909 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
SSX3Q99909 RNU4-90P-201ENST00000362773 141 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 RNU6-801P-201ENST00000364087 105 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 Y_RNA.796-201ENST00000364268 102 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 RNU6-1187P-201ENST00000364771 110 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 Y_RNA.799-201ENST00000364992 102 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 SNORA25.9-201ENST00000365087 128 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 RNU6-969P-201ENST00000383900 105 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 Y_RNA.394-201ENST00000383942 103 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 RNU6-102P-201ENST00000384485 104 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 MIR19B1-201ENST00000384829 87 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 SNORD115-46-201ENST00000390982 71 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 RNU2-14P-201ENST00000411053 191 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 RNA5SP247-201ENST00000411181 105 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.95□□□□□ -2.26
SSX3Q99909 AL020996.3-201ENST00000606617 222 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.95□□□□□ -2.26
SSX3Q99909 AC134503.1-201ENST00000633048 54 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 AC134026.1-201ENST00000623249 2239 ntBASIC0.95□□□□□ -2.26
SSX3Q99909 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
SSX3Q99909 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
SSX3Q99909 AC008163.1-202ENST00000636004 2889 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 Y_RNA.380-201ENST00000365663 111 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 RNU6-442P-201ENST00000383968 104 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 Y_RNA.418-201ENST00000384029 102 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 SNORD38C-201ENST00000384381 69 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 Y_RNA.569-201ENST00000384749 103 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
SSX3Q99909 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.94□□□□□ -2.26
SSX3Q99909 HSPE1P25-201ENST00000455484 251 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 RPL39P28-201ENST00000465655 155 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 RNU6-496P-201ENST00000516145 99 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 ACA64.5-201ENST00000516207 127 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 RNU6-191P-201ENST00000516295 94 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 RNU7-43P-201ENST00000516554 64 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 SNORA40.15-201ENST00000516884 107 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 MIR4764-201ENST00000580680 88 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 MIR4661-201ENST00000582720 75 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 PRELID3BP2-201ENST00000605362 201 ntBASIC0.94□□□□□ -2.26
SSX3Q99909 Y_RNA.136-201ENST00000363444 102 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 RNU6-674P-201ENST00000363831 107 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 SNORA22B-201ENST00000383876 138 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 SNORA26.5-201ENST00000391215 123 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 MIR548P-201ENST00000408336 84 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 MTCO2P12-201ENST00000427426 682 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 snoU13.25-201ENST00000458945 104 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 SNORD123-201ENST00000459473 70 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 COX6CP14-201ENST00000469580 174 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 AC087343.1-201ENST00000477341 475 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 RPS26P48-201ENST00000491713 339 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.93□□□□□ -2.26
SSX3Q99909 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.93□□□□□ -2.26
SSX3Q99909 RPL23AP91-201ENST00000569211 455 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.93□□□□□ -2.26
SSX3Q99909 AC005357.1-201ENST00000588399 301 ntBASIC0.93□□□□□ -2.26
SSX3Q99909 Y_RNA.138-201ENST00000363462 102 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 Y_RNA.226-201ENST00000364337 114 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 SNORA75.2-201ENST00000391138 150 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 SNORA75.3-201ENST00000391231 150 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 MTCO2P33-201ENST00000402100 465 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 MIR1278-201ENST00000408753 81 ntBASIC0.92□□□□□ -2.26
SSX3Q99909 RNU7-90P-201ENST00000459216 62 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms