Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.07□□□□□ -2.08
NUP88Q99567 SNORD3E-202ENST00000627253 216 ntBASIC2.07□□□□□ -2.08
NUP88Q99567 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
NUP88Q99567 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
NUP88Q99567 Y_RNA.24-201ENST00000362508 103 ntBASIC2.06□□□□□ -2.08
NUP88Q99567 RNU6-674P-201ENST00000363831 107 ntBASIC2.06□□□□□ -2.08
NUP88Q99567 RNU6-457P-201ENST00000363999 107 ntBASIC2.06□□□□□ -2.08
NUP88Q99567 Y_RNA.238-201ENST00000364441 102 ntBASIC2.06□□□□□ -2.08
NUP88Q99567 RNU6-163P-201ENST00000384396 106 ntBASIC2.06□□□□□ -2.08
NUP88Q99567 SNORA12.1-201ENST00000390873 148 ntBASIC2.06□□□□□ -2.08
NUP88Q99567 PGBD4P5-201ENST00000445958 426 ntBASIC2.06□□□□□ -2.08
NUP88Q99567 RNA5SP168-201ENST00000516642 112 ntBASIC2.06□□□□□ -2.08
NUP88Q99567 AP000942.3-201ENST00000603702 160 ntBASIC2.06□□□□□ -2.08
NUP88Q99567 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
NUP88Q99567 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.06□□□□□ -2.08
NUP88Q99567 RNU6-1209P-201ENST00000363655 107 ntBASIC2.05□□□□□ -2.08
NUP88Q99567 RNU6-203P-201ENST00000384038 104 ntBASIC2.05□□□□□ -2.08
NUP88Q99567 Z98949.2-201ENST00000440996 144 ntBASIC2.05□□□□□ -2.08
NUP88Q99567 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.05□□□□□ -2.08
NUP88Q99567 AC107393.1-201ENST00000512403 346 ntBASIC2.05□□□□□ -2.08
NUP88Q99567 RNU7-12P-201ENST00000516030 62 ntBASIC2.05□□□□□ -2.08
NUP88Q99567 MIR4282-201ENST00000583613 67 ntBASIC2.05□□□□□ -2.08
NUP88Q99567 AC103810.8-201ENST00000607347 118 ntBASIC2.05□□□□□ -2.08
NUP88Q99567 AL365265.1-201ENST00000621045 234 ntBASIC2.05□□□□□ -2.08
NUP88Q99567 Y_RNA.4-201ENST00000362333 112 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 Y_RNA.262-201ENST00000364641 102 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 RNU6-969P-201ENST00000383900 105 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 MIR30A-201ENST00000385092 71 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 U8.16-201ENST00000391279 133 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 PIGPP3-201ENST00000425307 415 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 AC099513.1-201ENST00000490423 301 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 RNU6-388P-201ENST00000517012 105 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 RNU6-389P-201ENST00000517048 105 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.04□□□□□ -2.08
NUP88Q99567 MIR3683-201ENST00000580847 82 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 AL096840.1-201ENST00000603287 93 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 AL513423.1-201ENST00000621695 132 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 MIR8063-201ENST00000621930 81 ntBASIC2.04□□□□□ -2.08
NUP88Q99567 Y_RNA.304-201ENST00000365011 112 ntBASIC2.03□□□□□ -2.08
NUP88Q99567 RNA5SP259-201ENST00000365541 109 ntBASIC2.03□□□□□ -2.08
NUP88Q99567 Y_RNA.515-201ENST00000384535 112 ntBASIC2.03□□□□□ -2.08
NUP88Q99567 MT-TG-201ENST00000387429 68 ntBASIC2.03□□□□□ -2.08
NUP88Q99567 MIR526A2-201ENST00000390198 65 ntBASIC2.03□□□□□ -2.08
NUP88Q99567 RPL30P13-201ENST00000418873 348 ntBASIC2.03□□□□□ -2.08
NUP88Q99567 snoU13.9-201ENST00000458927 103 ntBASIC2.03□□□□□ -2.08
NUP88Q99567 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.03□□□□□ -2.08
NUP88Q99567 MIR4419B-201ENST00000577260 68 ntBASIC2.03□□□□□ -2.08
NUP88Q99567 MIR4778-201ENST00000577635 80 ntBASIC2.03□□□□□ -2.08
NUP88Q99567 AC120024.3-201ENST00000603167 156 ntBASIC2.03□□□□□ -2.08
NUP88Q99567 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC2.03□□□□□ -2.08
NUP88Q99567 AC095038.3-201ENST00000634439 195 ntBASIC2.03□□□□□ -2.08
NUP88Q99567 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC2.03□□□□□ -2.09
NUP88Q99567 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC2.02□□□□□ -2.09
NUP88Q99567 RNU6-379P-201ENST00000363813 104 ntBASIC2.02□□□□□ -2.09
NUP88Q99567 Y_RNA.796-201ENST00000364268 102 ntBASIC2.02□□□□□ -2.09
NUP88Q99567 Y_RNA.799-201ENST00000364992 102 ntBASIC2.02□□□□□ -2.09
NUP88Q99567 RNU6-424P-201ENST00000384367 105 ntBASIC2.02□□□□□ -2.09
NUP88Q99567 Y_RNA.552-201ENST00000384665 112 ntBASIC2.02□□□□□ -2.09
NUP88Q99567 MIR522-201ENST00000385071 87 ntBASIC2.02□□□□□ -2.09
NUP88Q99567 RNA5SP247-201ENST00000411181 105 ntBASIC2.02□□□□□ -2.09
NUP88Q99567 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.02□□□□□ -2.09
NUP88Q99567 CYCTP-201ENST00000504253 315 ntBASIC2.02□□□□□ -2.09
NUP88Q99567 RNU6-1007P-201ENST00000516586 107 ntBASIC2.02□□□□□ -2.09
NUP88Q99567 RNU6-1116P-201ENST00000517269 99 ntBASIC2.02□□□□□ -2.09
NUP88Q99567 SUMO2P16-201ENST00000519475 264 ntBASIC2.02□□□□□ -2.09
NUP88Q99567 AC100767.1-201ENST00000528178 123 ntBASIC2.02□□□□□ -2.09
NUP88Q99567 AC068700.1-201ENST00000565862 3754 ntBASIC2.01□□□□□ -2.09
NUP88Q99567 MIR424-201ENST00000362227 98 ntBASIC2.01□□□□□ -2.09
NUP88Q99567 RNU6-1123P-201ENST00000362347 106 ntBASIC2.01□□□□□ -2.09
NUP88Q99567 snoU2-30.1-201ENST00000365012 70 ntBASIC2.01□□□□□ -2.09
NUP88Q99567 Y_RNA.308-201ENST00000365043 101 ntBASIC2.01□□□□□ -2.09
NUP88Q99567 MIR660-201ENST00000385235 97 ntBASIC2.01□□□□□ -2.09
NUP88Q99567 AC004965.1-201ENST00000413033 213 ntBASIC2.01□□□□□ -2.09
NUP88Q99567 AL049861.1-201ENST00000603130 150 ntBASIC2.01□□□□□ -2.09
NUP88Q99567 AC078938.1-201ENST00000620993 318 ntBASIC2.01□□□□□ -2.09
NUP88Q99567 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
NUP88Q99567 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2□□□□□ -2.09
NUP88Q99567 Y_RNA.199-201ENST00000364014 102 ntBASIC2□□□□□ -2.09
NUP88Q99567 RNU4-17P-201ENST00000365598 141 ntBASIC2□□□□□ -2.09
NUP88Q99567 MIR513A1-201ENST00000385138 129 ntBASIC2□□□□□ -2.09
NUP88Q99567 RNA5SP496-201ENST00000391240 109 ntBASIC2□□□□□ -2.09
NUP88Q99567 MIR891A-201ENST00000401237 79 ntBASIC2□□□□□ -2.09
NUP88Q99567 MIR1298-201ENST00000408783 112 ntBASIC2□□□□□ -2.09
NUP88Q99567 HSPE1P24-201ENST00000450782 238 ntBASIC2□□□□□ -2.09
NUP88Q99567 AC005908.1-201ENST00000468701 347 ntBASIC2□□□□□ -2.09
NUP88Q99567 AC114811.1-201ENST00000507207 168 ntBASIC2□□□□□ -2.09
NUP88Q99567 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC2□□□□□ -2.09
NUP88Q99567 AC024614.2-201ENST00000577584 372 ntBASIC2□□□□□ -2.09
NUP88Q99567 MIR4303-201ENST00000581299 66 ntBASIC2□□□□□ -2.09
NUP88Q99567 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2□□□□□ -2.09
NUP88Q99567 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.99□□□□□ -2.09
NUP88Q99567 SNORD14E-201ENST00000364009 85 ntBASIC1.99□□□□□ -2.09
NUP88Q99567 U8.5-201ENST00000364528 136 ntBASIC1.99□□□□□ -2.09
NUP88Q99567 RNU6-923P-201ENST00000364753 107 ntBASIC1.99□□□□□ -2.09
NUP88Q99567 Y_RNA.572-201ENST00000384757 98 ntBASIC1.99□□□□□ -2.09
NUP88Q99567 MIR626-201ENST00000385032 94 ntBASIC1.99□□□□□ -2.09
NUP88Q99567 RNU6-493P-201ENST00000391321 108 ntBASIC1.99□□□□□ -2.09
NUP88Q99567 Y_RNA.626-201ENST00000411288 95 ntBASIC1.99□□□□□ -2.09
NUP88Q99567 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.99□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 138.1 ms