Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.9□□□□□ -2.27
VPS39Q96JC1 AL138825.1-201ENST00000618587 192 ntBASIC0.9□□□□□ -2.27
VPS39Q96JC1 AC068700.1-201ENST00000565862 3754 ntBASIC0.9□□□□□ -2.27
VPS39Q96JC1 SNORA25.3-201ENST00000363205 127 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 SNORD113-8-201ENST00000363497 74 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 RNU4-50P-201ENST00000364361 141 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 Y_RNA.418-201ENST00000384029 102 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 Y_RNA.456-201ENST00000384232 111 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 RNU6-823P-201ENST00000391042 103 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 SNORA75.2-201ENST00000391138 150 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 RNU6-131P-201ENST00000391144 107 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 SNORA75.3-201ENST00000391231 150 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 RNU6-710P-201ENST00000410424 105 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 RNU6-121P-201ENST00000410525 99 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 LINC01399-202ENST00000458450 244 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 RNU7-141P-201ENST00000459304 62 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 RPL23AP54-201ENST00000495129 419 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 RNU7-41P-201ENST00000515917 61 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 SNORD111.1-201ENST00000516421 86 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 RNU6-897P-201ENST00000517135 105 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 MIR4300-201ENST00000581016 96 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 AP003357.1-201ENST00000604497 148 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 PRELID3BP2-201ENST00000605362 201 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 MIR8070-201ENST00000616510 88 ntBASIC0.89□□□□□ -2.27
VPS39Q96JC1 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
VPS39Q96JC1 Y_RNA.26-201ENST00000362539 101 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 RNU6-1209P-201ENST00000363655 107 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 Y_RNA.203-201ENST00000364106 102 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 MIR452-201ENST00000385020 85 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 MIR532-201ENST00000385025 91 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.88□□□□□ -2.27
VPS39Q96JC1 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 POLR2KP2-201ENST00000438155 177 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 HSPE1P25-201ENST00000455484 251 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 NDUFA4P2-201ENST00000489989 244 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.88□□□□□ -2.27
VPS39Q96JC1 PSMC1P5-201ENST00000512850 177 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 RNU6-475P-201ENST00000516073 104 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 RNA5SP102-201ENST00000516865 106 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 Y_RNA.715-201ENST00000517082 110 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 AC022616.4-201ENST00000522985 181 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 AL160413.1-201ENST00000622780 310 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 AC008163.1-202ENST00000636004 2889 ntBASIC0.88□□□□□ -2.27
VPS39Q96JC1 Y_RNA.28-201ENST00000362554 111 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 Y_RNA.796-201ENST00000364268 102 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 Y_RNA.799-201ENST00000364992 102 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 RNU6-806P-201ENST00000365147 105 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 AC117470.1-201ENST00000381974 330 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 SNORA22B-201ENST00000383876 138 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 RNU6-969P-201ENST00000383900 105 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 MIR608-201ENST00000384820 100 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 AC022028.1-201ENST00000412054 408 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 SEPT14P8-201ENST00000508026 178 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 RNU6-197P-201ENST00000516680 100 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 AC127455.1-201ENST00000565496 145 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 MIR4653-201ENST00000585107 83 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.87□□□□□ -2.27
VPS39Q96JC1 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC0.87□□□□□ -2.27
VPS39Q96JC1 AL391903.3-201ENST00000612158 163 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 MIR6857-201ENST00000613267 93 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 MIR548AY-201ENST00000617669 107 ntBASIC0.87□□□□□ -2.27
VPS39Q96JC1 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.87□□□□□ -2.27
VPS39Q96JC1 Y_RNA.61-201ENST00000362835 102 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 SNORD114-2-201ENST00000363953 78 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 snoU2-30.1-201ENST00000365012 70 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 SNORA25.9-201ENST00000365087 128 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 Y_RNA.389-201ENST00000383924 113 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 MIR215-201ENST00000384858 110 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 SNORA36B-201ENST00000410438 131 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 U8.19-201ENST00000459095 133 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 RNU6-191P-201ENST00000516295 94 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 SNORA74.3-201ENST00000517108 154 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 AC136628.3-201ENST00000521868 290 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.86□□□□□ -2.27
VPS39Q96JC1 SNORD113-5-201ENST00000607261 78 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 MIR376A1-201ENST00000616574 68 ntBASIC0.86□□□□□ -2.27
VPS39Q96JC1 Y_RNA.222-201ENST00000364264 102 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 Y_RNA.431-201ENST00000384086 102 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 Y_RNA.526-201ENST00000384572 110 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 Y_RNA.535-201ENST00000384612 99 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 MIR520C-201ENST00000385005 87 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 MIR136-201ENST00000385207 82 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 SNORD115-46-201ENST00000390982 71 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 SNORD28B-201ENST00000390993 75 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 MIR942-201ENST00000401111 86 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 MTCO2P33-201ENST00000402100 465 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 AC006461.1-201ENST00000412637 326 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.85□□□□□ -2.27
VPS39Q96JC1 Y_RNA.631-201ENST00000459607 101 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 MRPS35P2-201ENST00000508242 191 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 RNU6-496P-201ENST00000516145 99 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 RNU6-764P-201ENST00000516396 105 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 RNU7-116P-201ENST00000516940 62 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 RNU6-1137P-201ENST00000517073 99 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 FAM71BP1-201ENST00000604431 523 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 AC090574.1-201ENST00000623186 233 ntBASIC0.85□□□□□ -2.27
VPS39Q96JC1 SNORD114-27-201ENST00000363766 70 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 SNORA72.4-201ENST00000384174 132 ntBASIC0.84□□□□□ -2.27
VPS39Q96JC1 Y_RNA.527-201ENST00000384573 102 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 166.8 ms