Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 AC104695.3-201ENST00000604052 296 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 AC124312.5-201ENST00000604451 268 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 JPX_2.1-201ENST00000614161 69 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 MIR376A1-201ENST00000616574 68 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 AC134503.1-201ENST00000633048 54 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 RNU4-90P-201ENST00000362773 141 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 RNA5SP264-201ENST00000363115 107 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 RNU4-80P-201ENST00000363200 141 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 RNU6-1209P-201ENST00000363655 107 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 RNU5E-4P-201ENST00000364931 120 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 SNORD114-24-201ENST00000365029 72 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.535-201ENST00000384612 99 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.581-201ENST00000391017 97 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 MTND4LP30-201ENST00000454092 297 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 RNU7-90P-201ENST00000459216 62 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 RNU6-947P-201ENST00000516264 106 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 RNU6-1046P-201ENST00000516538 107 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 RNU11-2P-201ENST00000516898 142 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 MIR4764-201ENST00000580680 88 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 AC008507.4-201ENST00000585464 127 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 AC013244.2-201ENST00000603396 103 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 RAC1P9-201ENST00000604990 392 ntBASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.75□□□□□ -2.29
RPUSD4Q96CM3 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 MTND4P29-201ENST00000503122 1372 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.61-201ENST00000362835 102 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 SNORD113-8-201ENST00000363497 74 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 SNORD14E-201ENST00000364009 85 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 RNU4-38P-201ENST00000364472 129 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 RNU6-867P-201ENST00000364956 107 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 RNU6-144P-201ENST00000383951 107 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 MIR520C-201ENST00000385005 87 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 MIR516B2-201ENST00000385190 85 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 MIR146A-201ENST00000385201 99 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 SNORA75.2-201ENST00000391138 150 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 SNORA75.3-201ENST00000391231 150 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 SNORA36B-201ENST00000410438 131 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 MLLT10P1-201ENST00000418346 262 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 POLR2J4-204ENST00000418424 324 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 SNORD11-201ENST00000459124 84 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 SNORD123-201ENST00000459473 70 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.711-201ENST00000516993 102 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 RNU6-897P-201ENST00000517135 105 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 RNU6-988P-201ENST00000519081 107 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 MIR4661-201ENST00000582720 75 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 AC005357.1-201ENST00000588399 301 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 AL020996.3-201ENST00000606617 222 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.74□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.158-201ENST00000363651 101 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 RNU6-899P-201ENST00000363947 107 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.370-201ENST00000365589 108 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 RNU6-442P-201ENST00000383968 104 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 SNORD38C-201ENST00000384381 69 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 RNU6-308P-201ENST00000390957 107 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 RNU6-482P-201ENST00000391068 107 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 SNORA26.5-201ENST00000391215 123 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 RNU2-14P-201ENST00000411053 191 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 RN7SKP164-201ENST00000516138 266 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 RNU6-1007P-201ENST00000516586 107 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 MIR4524B-201ENST00000581569 115 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 AP000942.3-201ENST00000603702 160 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 AL355297.3-201ENST00000604082 446 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 AC006441.5-201ENST00000612680 209 ntBASIC0.73□□□□□ -2.29
RPUSD4Q96CM3 RNU1-36P-201ENST00000365130 165 ntBASIC0.72□□□□□ -2.29
RPUSD4Q96CM3 RNU6-102P-201ENST00000384485 104 ntBASIC0.72□□□□□ -2.29
RPUSD4Q96CM3 RNU6-101P-201ENST00000410323 104 ntBASIC0.72□□□□□ -2.29
RPUSD4Q96CM3 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.72□□□□□ -2.29
RPUSD4Q96CM3 AL392103.1-201ENST00000447000 198 ntBASIC0.72□□□□□ -2.29
RPUSD4Q96CM3 RNU7-41P-201ENST00000515917 61 ntBASIC0.72□□□□□ -2.29
RPUSD4Q96CM3 RNU6-764P-201ENST00000516396 105 ntBASIC0.72□□□□□ -2.29
RPUSD4Q96CM3 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.72□□□□□ -2.29
RPUSD4Q96CM3 AC104984.5-201ENST00000586878 94 ntBASIC0.72□□□□□ -2.29
RPUSD4Q96CM3 AL021707.8-201ENST00000609428 183 ntBASIC0.72□□□□□ -2.29
RPUSD4Q96CM3 MIR6715A-201ENST00000615929 79 ntBASIC0.72□□□□□ -2.29
RPUSD4Q96CM3 SEPT14P17-201ENST00000617978 177 ntBASIC0.72□□□□□ -2.29
RPUSD4Q96CM3 RNU6-268P-201ENST00000364174 107 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 RNU6-290P-201ENST00000365212 101 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 RNU6-326P-201ENST00000365480 107 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 Y_RNA.569-201ENST00000384749 103 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 MIR548P-201ENST00000408336 84 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 MIR1185-1-201ENST00000408598 86 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 RNU6-121P-201ENST00000410525 99 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 MTCO1P5-201ENST00000433573 344 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 SNORA18.7-201ENST00000516910 131 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 AC136443.5-201ENST00000603741 370 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 AC091895.1-201ENST00000624494 256 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 AC008163.1-202ENST00000636004 2889 ntBASIC0.71□□□□□ -2.3
RPUSD4Q96CM3 SNORD114-2-201ENST00000363953 78 ntBASIC0.7□□□□□ -2.3
RPUSD4Q96CM3 RNU6-1048P-201ENST00000364054 107 ntBASIC0.7□□□□□ -2.3
RPUSD4Q96CM3 SNORA22B-201ENST00000383876 138 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 175.1 ms