Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 Y_RNA.383-201ENST00000383855 97 ntBASIC1.18□□□□□ -2.22
SKA1Q96BD8 MIR3145-201ENST00000580727 82 ntBASIC1.18□□□□□ -2.22
SKA1Q96BD8 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.18□□□□□ -2.22
SKA1Q96BD8 RNA5SP264-201ENST00000363115 107 ntBASIC1.17□□□□□ -2.22
SKA1Q96BD8 SNORA63.7-201ENST00000365579 123 ntBASIC1.17□□□□□ -2.22
SKA1Q96BD8 SNORD38C-201ENST00000384381 69 ntBASIC1.17□□□□□ -2.22
SKA1Q96BD8 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC1.17□□□□□ -2.22
SKA1Q96BD8 AL117351.2-201ENST00000513571 157 ntBASIC1.17□□□□□ -2.22
SKA1Q96BD8 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.17□□□□□ -2.22
SKA1Q96BD8 MIR4764-201ENST00000580680 88 ntBASIC1.17□□□□□ -2.22
SKA1Q96BD8 AC007485.1-201ENST00000616755 206 ntBASIC1.17□□□□□ -2.22
SKA1Q96BD8 uc_338.22-201ENST00000622722 187 ntBASIC1.17□□□□□ -2.22
SKA1Q96BD8 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC1.17□□□□□ -2.22
SKA1Q96BD8 RNA5SP48-201ENST00000363969 126 ntBASIC1.16□□□□□ -2.22
SKA1Q96BD8 U8.7-201ENST00000364940 136 ntBASIC1.16□□□□□ -2.22
SKA1Q96BD8 Y_RNA.395-201ENST00000383945 109 ntBASIC1.16□□□□□ -2.22
SKA1Q96BD8 SNORA75.2-201ENST00000391138 150 ntBASIC1.16□□□□□ -2.22
SKA1Q96BD8 SNORA75.3-201ENST00000391231 150 ntBASIC1.16□□□□□ -2.22
SKA1Q96BD8 SNORD124-201ENST00000459577 104 ntBASIC1.16□□□□□ -2.22
SKA1Q96BD8 RPS26P48-201ENST00000491713 339 ntBASIC1.16□□□□□ -2.22
SKA1Q96BD8 RNU6-1007P-201ENST00000516586 107 ntBASIC1.16□□□□□ -2.22
SKA1Q96BD8 MIR103A2-201ENST00000362154 78 ntBASIC1.15□□□□□ -2.23
SKA1Q96BD8 RNU6-969P-201ENST00000383900 105 ntBASIC1.15□□□□□ -2.23
SKA1Q96BD8 RNU6-442P-201ENST00000383968 104 ntBASIC1.15□□□□□ -2.23
SKA1Q96BD8 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.15□□□□□ -2.23
SKA1Q96BD8 POLR2J4-204ENST00000418424 324 ntBASIC1.15□□□□□ -2.23
SKA1Q96BD8 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.15□□□□□ -2.23
SKA1Q96BD8 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.15□□□□□ -2.23
SKA1Q96BD8 AC090971.5-201ENST00000621102 293 ntBASIC1.15□□□□□ -2.23
SKA1Q96BD8 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
SKA1Q96BD8 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.15□□□□□ -2.23
SKA1Q96BD8 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.23
SKA1Q96BD8 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.14□□□□□ -2.23
SKA1Q96BD8 Y_RNA.242-201ENST00000364473 110 ntBASIC1.14□□□□□ -2.23
SKA1Q96BD8 SNORA22-201ENST00000383907 134 ntBASIC1.14□□□□□ -2.23
SKA1Q96BD8 SNORA22C-201ENST00000384614 134 ntBASIC1.14□□□□□ -2.23
SKA1Q96BD8 MIR489-201ENST00000384923 84 ntBASIC1.14□□□□□ -2.23
SKA1Q96BD8 MIR942-201ENST00000401111 86 ntBASIC1.14□□□□□ -2.23
SKA1Q96BD8 SNORD123-201ENST00000459473 70 ntBASIC1.14□□□□□ -2.23
SKA1Q96BD8 PDCD5P2-201ENST00000507570 312 ntBASIC1.14□□□□□ -2.23
SKA1Q96BD8 AC136628.3-201ENST00000521868 290 ntBASIC1.14□□□□□ -2.23
SKA1Q96BD8 MTATP6P23-201ENST00000440153 476 ntBASIC1.13□□□□□ -2.23
SKA1Q96BD8 MTND4P19-201ENST00000446659 478 ntBASIC1.13□□□□□ -2.23
SKA1Q96BD8 snoU13.25-201ENST00000458945 104 ntBASIC1.13□□□□□ -2.23
SKA1Q96BD8 RNU6-437P-201ENST00000459408 95 ntBASIC1.13□□□□□ -2.23
SKA1Q96BD8 PART1_1.1-201ENST00000611761 217 ntBASIC1.13□□□□□ -2.23
SKA1Q96BD8 AC090574.1-201ENST00000623186 233 ntBASIC1.13□□□□□ -2.23
SKA1Q96BD8 MIR369-201ENST00000362155 70 ntBASIC1.12□□□□□ -2.23
SKA1Q96BD8 RNU4-80P-201ENST00000363200 141 ntBASIC1.12□□□□□ -2.23
SKA1Q96BD8 RNU6-1209P-201ENST00000363655 107 ntBASIC1.12□□□□□ -2.23
SKA1Q96BD8 RNU1-93P-201ENST00000364704 169 ntBASIC1.12□□□□□ -2.23
SKA1Q96BD8 Y_RNA.330-201ENST00000365230 109 ntBASIC1.12□□□□□ -2.23
SKA1Q96BD8 SNORA36B-201ENST00000410438 131 ntBASIC1.12□□□□□ -2.23
SKA1Q96BD8 RNU6-130P-201ENST00000411112 103 ntBASIC1.12□□□□□ -2.23
SKA1Q96BD8 MTND4LP11-201ENST00000422184 280 ntBASIC1.12□□□□□ -2.23
SKA1Q96BD8 RNU7-41P-201ENST00000515917 61 ntBASIC1.12□□□□□ -2.23
SKA1Q96BD8 AC124312.5-201ENST00000604451 268 ntBASIC1.12□□□□□ -2.23
SKA1Q96BD8 MIR376A1-201ENST00000616574 68 ntBASIC1.12□□□□□ -2.23
SKA1Q96BD8 Y_RNA.445-201ENST00000384168 102 ntBASIC1.11□□□□□ -2.23
SKA1Q96BD8 SNORA72.4-201ENST00000384174 132 ntBASIC1.11□□□□□ -2.23
SKA1Q96BD8 FABP5P4-201ENST00000437203 171 ntBASIC1.11□□□□□ -2.23
SKA1Q96BD8 RPS29P28-201ENST00000446439 141 ntBASIC1.11□□□□□ -2.23
SKA1Q96BD8 Y_RNA.639-201ENST00000458981 102 ntBASIC1.11□□□□□ -2.23
SKA1Q96BD8 RNU7-141P-201ENST00000459304 62 ntBASIC1.11□□□□□ -2.23
SKA1Q96BD8 RNU6-113P-201ENST00000516653 101 ntBASIC1.11□□□□□ -2.23
SKA1Q96BD8 AC104695.3-201ENST00000604052 296 ntBASIC1.11□□□□□ -2.23
SKA1Q96BD8 RMST_2.1-201ENST00000617263 136 ntBASIC1.11□□□□□ -2.23
SKA1Q96BD8 SEPT14P17-201ENST00000617978 177 ntBASIC1.11□□□□□ -2.23
SKA1Q96BD8 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC1.1□□□□□ -2.23
SKA1Q96BD8 MIR96-201ENST00000362288 78 ntBASIC1.1□□□□□ -2.23
SKA1Q96BD8 SNORD113-8-201ENST00000363497 74 ntBASIC1.1□□□□□ -2.23
SKA1Q96BD8 RNU6-674P-201ENST00000363831 107 ntBASIC1.1□□□□□ -2.23
SKA1Q96BD8 SNORD42.2-201ENST00000365570 69 ntBASIC1.1□□□□□ -2.23
SKA1Q96BD8 RNU6-1067P-201ENST00000384752 107 ntBASIC1.1□□□□□ -2.23
SKA1Q96BD8 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.1□□□□□ -2.23
SKA1Q96BD8 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.1□□□□□ -2.23
SKA1Q96BD8 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.1□□□□□ -2.23
SKA1Q96BD8 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC1.1□□□□□ -2.23
SKA1Q96BD8 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC1.09□□□□□ -2.23
SKA1Q96BD8 SNORA25.3-201ENST00000363205 127 ntBASIC1.09□□□□□ -2.23
SKA1Q96BD8 SNORD114-27-201ENST00000363766 70 ntBASIC1.09□□□□□ -2.23
SKA1Q96BD8 Y_RNA.183-201ENST00000363882 113 ntBASIC1.09□□□□□ -2.23
SKA1Q96BD8 Y_RNA.286-201ENST00000364813 102 ntBASIC1.09□□□□□ -2.23
SKA1Q96BD8 RNU1-36P-201ENST00000365130 165 ntBASIC1.09□□□□□ -2.23
SKA1Q96BD8 Y_RNA.721-201ENST00000517207 102 ntBASIC1.09□□□□□ -2.23
SKA1Q96BD8 AP003716.2-201ENST00000528260 108 ntBASIC1.09□□□□□ -2.23
SKA1Q96BD8 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC1.09□□□□□ -2.23
SKA1Q96BD8 AL020996.3-201ENST00000606617 222 ntBASIC1.09□□□□□ -2.23
SKA1Q96BD8 AL442644.1-201ENST00000454390 3105 ntBASIC1.09□□□□□ -2.24
SKA1Q96BD8 Y_RNA.222-201ENST00000364264 102 ntBASIC1.08□□□□□ -2.24
SKA1Q96BD8 Y_RNA.419-201ENST00000384041 102 ntBASIC1.08□□□□□ -2.24
SKA1Q96BD8 MIR520E-201ENST00000384867 87 ntBASIC1.08□□□□□ -2.24
SKA1Q96BD8 RNU6-101P-201ENST00000410323 104 ntBASIC1.08□□□□□ -2.24
SKA1Q96BD8 AC010655.3-201ENST00000478818 450 ntBASIC1.08□□□□□ -2.24
SKA1Q96BD8 RNU6-1046P-201ENST00000516538 107 ntBASIC1.08□□□□□ -2.24
SKA1Q96BD8 RNU11-2P-201ENST00000516898 142 ntBASIC1.08□□□□□ -2.24
SKA1Q96BD8 Y_RNA.715-201ENST00000517082 110 ntBASIC1.08□□□□□ -2.24
SKA1Q96BD8 RNU6-1223P-201ENST00000517124 104 ntBASIC1.08□□□□□ -2.24
SKA1Q96BD8 RPL23AP91-201ENST00000569211 455 ntBASIC1.08□□□□□ -2.24
SKA1Q96BD8 MIR4300-201ENST00000581016 96 ntBASIC1.08□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms