Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 RNU4-66P-201ENST00000365199 138 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-0.89□□□□□ -2.55
USF3Q68DE3 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-0.89□□□□□ -2.55
USF3Q68DE3 AC073464.1-201ENST00000429823 534 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 MTCO3P38-201ENST00000468910 766 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 RNU2-69P-201ENST00000516061 100 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 SNORD22.1-201ENST00000516331 125 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 RNA5SP470-201ENST00000516463 106 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 AC026421.1-201ENST00000519101 163 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 MIR3179-1-201ENST00000578940 84 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 MIR3179-2-201ENST00000579107 84 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 MIR3179-3-201ENST00000579566 84 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 MIR3179-4-201ENST00000617599 84 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 RNU6-1216P-201ENST00000362590 107 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 Y_RNA.55-201ENST00000362797 102 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 RNU6-324P-201ENST00000363957 106 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 RNY1P12-201ENST00000364251 105 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 Y_RNA.367-201ENST00000365544 101 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 USP9YP16-201ENST00000430287 407 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 SNRPGP10-201ENST00000432323 225 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 RNA5SP169-201ENST00000517268 117 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC-0.89□□□□□ -2.55
USF3Q68DE3 AP001330.5-201ENST00000607176 411 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 AL121895.2-201ENST00000619558 447 ntBASIC-0.89□□□□□ -2.55
USF3Q68DE3 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC-0.9□□□□□ -2.55
USF3Q68DE3 Y_RNA.1-201ENST00000352915 104 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 RNU6-433P-201ENST00000363216 104 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 RNU6-280P-201ENST00000364145 104 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 Y_RNA.365-201ENST00000365537 102 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 Y_RNA.368-201ENST00000365547 113 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 Y_RNA.484-201ENST00000384389 103 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 RNU6ATAC42P-201ENST00000408637 95 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 AL354751.2-201ENST00000415471 210 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 AC005771.1-201ENST00000585581 349 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 AL356055.1-201ENST00000602528 446 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 AP000942.4-201ENST00000604811 241 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 AC064836.2-201ENST00000609491 462 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 MIR6129-201ENST00000616087 109 ntBASIC-0.9□□□□□ -2.55
USF3Q68DE3 MIR410-201ENST00000362222 80 ntBASIC-0.91□□□□□ -2.55
USF3Q68DE3 MIR30D-201ENST00000362283 70 ntBASIC-0.91□□□□□ -2.55
USF3Q68DE3 SNORD115-2-201ENST00000362842 82 ntBASIC-0.91□□□□□ -2.55
USF3Q68DE3 U8.15-201ENST00000390947 134 ntBASIC-0.91□□□□□ -2.55
USF3Q68DE3 AC074085.1-201ENST00000413598 418 ntBASIC-0.91□□□□□ -2.55
USF3Q68DE3 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC-0.91□□□□□ -2.55
USF3Q68DE3 MTND2P3-201ENST00000452458 470 ntBASIC-0.91□□□□□ -2.55
USF3Q68DE3 U8.19-201ENST00000459095 133 ntBASIC-0.91□□□□□ -2.55
USF3Q68DE3 U8.22-201ENST00000459141 133 ntBASIC-0.91□□□□□ -2.55
USF3Q68DE3 MIR4491-201ENST00000581087 68 ntBASIC-0.91□□□□□ -2.55
USF3Q68DE3 MIR6082-201ENST00000613604 109 ntBASIC-0.91□□□□□ -2.55
USF3Q68DE3 RNU6-1292P-201ENST00000383856 107 ntBASIC-0.91□□□□□ -2.56
USF3Q68DE3 RNU6-437P-201ENST00000459408 95 ntBASIC-0.91□□□□□ -2.56
USF3Q68DE3 RNU6-329P-201ENST00000459618 107 ntBASIC-0.91□□□□□ -2.56
USF3Q68DE3 RPL7P42-201ENST00000481005 679 ntBASIC-0.91□□□□□ -2.56
USF3Q68DE3 AC011352.1-201ENST00000512300 793 ntBASIC-0.91□□□□□ -2.56
USF3Q68DE3 TUSC7.1-201ENST00000610969 165 ntBASIC-0.91□□□□□ -2.56
USF3Q68DE3 uc_338.19-201ENST00000616808 99 ntBASIC-0.91□□□□□ -2.56
USF3Q68DE3 SEPT14P19-203ENST00000633205 211 ntBASIC-0.91□□□□□ -2.56
USF3Q68DE3 MTND5P18-201ENST00000445624 1801 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 Y_RNA.12-201ENST00000362393 112 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 Y_RNA.123-201ENST00000363338 102 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 RNU6-431P-201ENST00000383874 107 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 Y_RNA.399-201ENST00000383955 105 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 RNU6-926P-201ENST00000384075 107 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 Y_RNA.450-201ENST00000384198 113 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 MIR1-2-201ENST00000384961 85 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 MIR204-201ENST00000385200 110 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 RNU6-721P-201ENST00000410155 105 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 MTND1P11-201ENST00000456661 876 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 RNU7-67P-201ENST00000459003 62 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC-0.92□□□□□ -2.56
USF3Q68DE3 RNU6-830P-201ENST00000516353 107 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 Y_RNA.683-201ENST00000516508 93 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 RNU6-158P-201ENST00000517104 100 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 MIR4280-201ENST00000582178 76 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 AP002371.2-201ENST00000624450 503 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 RNU6-108P-201ENST00000365558 107 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 SNORA22B-201ENST00000383876 138 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 RPL30P16-201ENST00000419341 429 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 AC022784.5-201ENST00000522241 437 ntBASIC-0.92□□□□□ -2.56
USF3Q68DE3 Y_RNA.6-201ENST00000362350 114 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 Y_RNA.13-201ENST00000362403 112 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 SNORD115-32-201ENST00000364079 82 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 SNORD115-42-201ENST00000364273 82 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 RNU6-1157P-201ENST00000384456 106 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 RNU6-274P-201ENST00000459566 107 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 Y_RNA.692-201ENST00000516627 105 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC-0.93□□□□□ -2.56
USF3Q68DE3 AC073648.5-201ENST00000603502 305 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 MIR382-201ENST00000637119 76 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 Y_RNA.32-201ENST00000362589 110 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 SNORD115-30-201ENST00000364117 82 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 RNU6-224P-201ENST00000384055 107 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 SNORA72-201ENST00000384339 132 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 Y_RNA.494-201ENST00000384432 111 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 Y_RNA.539-201ENST00000384635 107 ntBASIC-0.93□□□□□ -2.56
USF3Q68DE3 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC-0.93□□□□□ -2.56
USF3Q68DE3 RPL30P15-201ENST00000457129 321 ntBASIC-0.93□□□□□ -2.56
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms