Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 Y_RNA.374-201ENST00000365606 101 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 RNU6-890P-201ENST00000384121 107 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 SNORD28B-201ENST00000390993 75 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 RNU1-119P-201ENST00000391122 165 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 RNU6-192P-201ENST00000391253 100 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 AC244098.3-201ENST00000424803 96 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 AC244023.1-201ENST00000426884 112 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 MTND1P4-201ENST00000435196 415 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 Y_RNA.655-201ENST00000515919 96 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 Y_RNA.714-201ENST00000517065 90 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 AC011195.1-201ENST00000578177 177 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 MIR4659A-201ENST00000580269 81 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 MIR548AR-201ENST00000582191 57 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 AC242498.1-201ENST00000604134 111 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 AC243829.6-201ENST00000612652 106 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 AC243994.1-201ENST00000618627 109 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 SNORD14E-201ENST00000364009 85 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
FOXA1P55317 RNU6-945P-201ENST00000383947 107 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 SNORA2B-201ENST00000384583 137 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 RNU6-1067P-201ENST00000384752 107 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 MIR1827-201ENST00000408549 66 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 RNA5SP95-201ENST00000410319 137 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 RNU6-855P-201ENST00000410395 104 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 Y_RNA.599-201ENST00000410489 109 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 Y_RNA.605-201ENST00000410577 105 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 PDCL2P1-201ENST00000419302 352 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 MTCO2P27-201ENST00000420740 428 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 RNU6-470P-201ENST00000515954 104 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 MIR4300-201ENST00000581016 96 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 RBM11P1-201ENST00000604951 799 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 AC022441.3-201ENST00000605737 136 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 MIR8087-201ENST00000612745 78 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.34□□□□□ -2.36
FOXA1P55317 MIR330-201ENST00000362196 94 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 Y_RNA.160-201ENST00000363677 92 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 Y_RNA.166-201ENST00000363730 102 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 Y_RNA.230-201ENST00000364348 109 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 Y_RNA.279-201ENST00000364763 95 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 SNORA36.2-201ENST00000384004 127 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 RNU6-1323P-201ENST00000384025 107 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 RNU6-708P-201ENST00000384217 107 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 SNORA50A-201ENST00000384225 134 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 MIR570-201ENST00000384917 97 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 SNORD105-201ENST00000386910 85 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 RNA5SP222-201ENST00000411039 105 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 FCF1P9-201ENST00000412546 282 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 MCFD2P1-201ENST00000417812 300 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 MTND1P2-201ENST00000430604 821 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 AC018659.1-201ENST00000551083 169 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 MIR5690-201ENST00000583739 73 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 AC012433.1-201ENST00000588916 398 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 U2.1-201ENST00000618978 145 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 TPTEP1-208ENST00000636884 213 ntBASIC0.33□□□□□ -2.36
FOXA1P55317 SNORD18A-201ENST00000363753 72 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 Y_RNA.310-201ENST00000365063 113 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 Y_RNA.314-201ENST00000365114 102 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 RNU6-1175P-201ENST00000365200 107 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 Y_RNA.341-201ENST00000365341 102 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 VTRNA1-3-201ENST00000365645 89 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 SNORD38C-201ENST00000384381 69 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 MIR628-201ENST00000385229 95 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 RNU6-613P-201ENST00000410412 108 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 RNU6-710P-201ENST00000410424 105 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 RNU2-70P-201ENST00000410718 179 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 AC096644.2-201ENST00000429278 159 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.32□□□□□ -2.36
FOXA1P55317 LINC01691-201ENST00000450546 426 ntTSL 5 BASIC0.32□□□□□ -2.36
FOXA1P55317 MTCO3P10-201ENST00000455912 772 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.32□□□□□ -2.36
FOXA1P55317 RN7SKP295-201ENST00000517264 153 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 POLR3GP1-201ENST00000594073 261 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 AL355073.2-201ENST00000612106 557 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 AC138305.3-201ENST00000624988 240 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 U6.92-201ENST00000636464 89 ntBASIC0.32□□□□□ -2.36
FOXA1P55317 Y_RNA.203-201ENST00000364106 102 ntBASIC0.31□□□□□ -2.36
FOXA1P55317 SNORD81.2-201ENST00000365153 76 ntBASIC0.31□□□□□ -2.36
FOXA1P55317 AL590004.1-201ENST00000405321 300 ntBASIC0.31□□□□□ -2.36
FOXA1P55317 MIR1197-201ENST00000408818 88 ntBASIC0.31□□□□□ -2.36
FOXA1P55317 FGF7P6-202ENST00000451282 293 ntBASIC0.31□□□□□ -2.36
FOXA1P55317 NDUFAF4P4-201ENST00000454883 502 ntBASIC0.31□□□□□ -2.36
FOXA1P55317 RNU6-911P-201ENST00000516523 104 ntBASIC0.31□□□□□ -2.36
FOXA1P55317 RNU7-116P-201ENST00000516940 62 ntBASIC0.31□□□□□ -2.36
FOXA1P55317 AL355375.2-201ENST00000574825 175 ntBASIC0.31□□□□□ -2.36
FOXA1P55317 AL109933.3-201ENST00000619095 188 ntBASIC0.31□□□□□ -2.36
FOXA1P55317 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.31□□□□□ -2.36
FOXA1P55317 MIR1-1-201ENST00000362147 71 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 Y_RNA.27-201ENST00000362540 103 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 RNU6-442P-201ENST00000383968 104 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 RNY1P8-201ENST00000383970 114 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 Y_RNA.570-201ENST00000384750 101 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 RNU6-1237P-201ENST00000384777 107 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 SNRPGP14-201ENST00000435400 219 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.3□□□□□ -2.36
FOXA1P55317 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.3□□□□□ -2.36
FOXA1P55317 AC005042.3-201ENST00000453230 174 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 HMGN1P10-201ENST00000474557 553 ntBASIC0.3□□□□□ -2.36
FOXA1P55317 RPL23AP54-201ENST00000495129 419 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 172.5 ms