Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 MIR3670-2-201ENST00000582974 65 ntBASIC2.59□□□□□ -1.99
SOX9P48436 MIR3670-1-201ENST00000584160 65 ntBASIC2.59□□□□□ -1.99
SOX9P48436 MIR3670-3-201ENST00000584855 65 ntBASIC2.59□□□□□ -1.99
SOX9P48436 MIR3670-4-201ENST00000612260 65 ntBASIC2.59□□□□□ -1.99
SOX9P48436 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -2
SOX9P48436 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
SOX9P48436 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.58□□□□□ -2
SOX9P48436 ICE2P2-201ENST00000483823 2787 ntBASIC2.58□□□□□ -2
SOX9P48436 SNORA80E-201ENST00000384744 137 ntBASIC2.58□□□□□ -2
SOX9P48436 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.58□□□□□ -2
SOX9P48436 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.58□□□□□ -2
SOX9P48436 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.58□□□□□ -2
SOX9P48436 CYCTP-201ENST00000504253 315 ntBASIC2.58□□□□□ -2
SOX9P48436 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.58□□□□□ -2
SOX9P48436 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SOX9P48436 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
SOX9P48436 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
SOX9P48436 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
SOX9P48436 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.57□□□□□ -2
SOX9P48436 OR51A4-202ENST00000641898 4393 ntAPPRIS P1 BASIC2.57□□□□□ -2
SOX9P48436 RNU6-818P-201ENST00000364837 108 ntBASIC2.57□□□□□ -2
SOX9P48436 Y_RNA.336-201ENST00000365307 109 ntBASIC2.57□□□□□ -2
SOX9P48436 SNORA4.2-201ENST00000365313 147 ntBASIC2.57□□□□□ -2
SOX9P48436 RNU6-588P-201ENST00000410281 105 ntBASIC2.57□□□□□ -2
SOX9P48436 SNRPGP13-201ENST00000442212 177 ntBASIC2.57□□□□□ -2
SOX9P48436 snoU13.27-201ENST00000459278 104 ntBASIC2.57□□□□□ -2
SOX9P48436 snoU13.15-201ENST00000459407 104 ntBASIC2.57□□□□□ -2
SOX9P48436 RNU6-426P-201ENST00000516464 97 ntBASIC2.57□□□□□ -2
SOX9P48436 RNU6-406P-201ENST00000516470 107 ntBASIC2.57□□□□□ -2
SOX9P48436 RNA5SP437-201ENST00000517249 129 ntBASIC2.57□□□□□ -2
SOX9P48436 FO624990.1-201ENST00000636373 85 ntBASIC2.57□□□□□ -2
SOX9P48436 AC132825.6-201ENST00000638861 357 ntBASIC2.57□□□□□ -2
SOX9P48436 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.57□□□□□ -2
SOX9P48436 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.57□□□□□ -2
SOX9P48436 RNU6-978P-201ENST00000364371 103 ntBASIC2.56□□□□□ -2
SOX9P48436 SNORD24-201ENST00000383884 75 ntBASIC2.56□□□□□ -2
SOX9P48436 RNU6-296P-201ENST00000384608 107 ntBASIC2.56□□□□□ -2
SOX9P48436 RNU6-1031P-201ENST00000384773 107 ntBASIC2.56□□□□□ -2
SOX9P48436 MIR569-201ENST00000385228 96 ntBASIC2.56□□□□□ -2
SOX9P48436 RNA5SP210-201ENST00000391034 120 ntBASIC2.56□□□□□ -2
SOX9P48436 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC2.56□□□□□ -2
SOX9P48436 AC055731.1-201ENST00000474387 401 ntBASIC2.56□□□□□ -2
SOX9P48436 SNORA18.4-201ENST00000516440 124 ntBASIC2.56□□□□□ -2
SOX9P48436 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.56□□□□□ -2
SOX9P48436 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.56□□□□□ -2
SOX9P48436 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.55□□□□□ -2
SOX9P48436 RNA5SP393-201ENST00000363423 117 ntBASIC2.55□□□□□ -2
SOX9P48436 Y_RNA.568-201ENST00000384742 113 ntBASIC2.55□□□□□ -2
SOX9P48436 RN7SKP223-201ENST00000410582 62 ntBASIC2.55□□□□□ -2
SOX9P48436 AC234781.5-201ENST00000508429 271 ntBASIC2.55□□□□□ -2
SOX9P48436 RNU6-693P-201ENST00000516134 107 ntBASIC2.55□□□□□ -2
SOX9P48436 Y_RNA.666-201ENST00000516187 112 ntBASIC2.55□□□□□ -2
SOX9P48436 SNORA31.15-201ENST00000516771 132 ntBASIC2.55□□□□□ -2
SOX9P48436 RNU6-1270P-201ENST00000517128 108 ntBASIC2.55□□□□□ -2
SOX9P48436 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.55□□□□□ -2
SOX9P48436 U2.22-201ENST00000636441 106 ntBASIC2.55□□□□□ -2
SOX9P48436 ATP11C-201ENST00000327569 6115 ntAPPRIS P3 TSL 1 (best) BASIC2.55□□□□□ -2
SOX9P48436 RNA5SP425-201ENST00000410336 112 ntBASIC2.54□□□□□ -2
SOX9P48436 AC114811.1-201ENST00000507207 168 ntBASIC2.54□□□□□ -2
SOX9P48436 AC007336.1-201ENST00000576365 3828 ntBASIC2.54□□□□□ -2
SOX9P48436 AC010297.1-201ENST00000623948 149 ntBASIC2.54□□□□□ -2
SOX9P48436 AC027279.3-201ENST00000625055 122 ntBASIC2.54□□□□□ -2
SOX9P48436 MIR203B-201ENST00000636080 86 ntBASIC2.54□□□□□ -2
SOX9P48436 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
SOX9P48436 Y_RNA.66-201ENST00000362862 102 ntBASIC2.53□□□□□ -2
SOX9P48436 SNORD38C-201ENST00000384381 69 ntBASIC2.53□□□□□ -2
SOX9P48436 RNA5SP100-201ENST00000410903 110 ntBASIC2.53□□□□□ -2
SOX9P48436 RNA5SP59-201ENST00000410922 110 ntBASIC2.53□□□□□ -2
SOX9P48436 RN7SKP192-201ENST00000411291 327 ntBASIC2.53□□□□□ -2
SOX9P48436 CALM2P4-201ENST00000430810 426 ntBASIC2.53□□□□□ -2
SOX9P48436 AC011753.1-201ENST00000451001 220 ntBASIC2.53□□□□□ -2
SOX9P48436 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC2.53□□□□□ -2
SOX9P48436 RNU7-12P-201ENST00000516030 62 ntBASIC2.53□□□□□ -2
SOX9P48436 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.53□□□□□ -2
SOX9P48436 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.53□□□□□ -2
SOX9P48436 MIR4648-201ENST00000580107 72 ntBASIC2.53□□□□□ -2
SOX9P48436 AC046143.2-201ENST00000609789 160 ntBASIC2.53□□□□□ -2
SOX9P48436 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.53□□□□□ -2
SOX9P48436 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.53□□□□□ -2
SOX9P48436 AC010332.2-201ENST00000613083 1904 ntBASIC2.52□□□□□ -2.01
SOX9P48436 RNU6-1082P-201ENST00000364574 107 ntBASIC2.52□□□□□ -2.01
SOX9P48436 SNORD61-201ENST00000384252 73 ntBASIC2.52□□□□□ -2.01
SOX9P48436 SNORA40-201ENST00000388090 126 ntBASIC2.52□□□□□ -2.01
SOX9P48436 Y_RNA.584-201ENST00000391090 114 ntBASIC2.52□□□□□ -2.01
SOX9P48436 U8.16-201ENST00000391279 133 ntBASIC2.52□□□□□ -2.01
SOX9P48436 MIR891A-201ENST00000401237 79 ntBASIC2.52□□□□□ -2.01
SOX9P48436 AL359511.1-201ENST00000402970 211 ntBASIC2.52□□□□□ -2.01
SOX9P48436 MIR548O-201ENST00000408583 114 ntBASIC2.52□□□□□ -2.01
SOX9P48436 CYCSP49-201ENST00000420810 319 ntBASIC2.52□□□□□ -2.01
SOX9P48436 DIP2A-IT1-201ENST00000442434 428 ntTSL 2 BASIC2.52□□□□□ -2.01
SOX9P48436 RNA5SP281-201ENST00000516504 135 ntBASIC2.52□□□□□ -2.01
SOX9P48436 RNA5SP168-201ENST00000516642 112 ntBASIC2.52□□□□□ -2.01
SOX9P48436 MIR4446-201ENST00000578505 67 ntBASIC2.52□□□□□ -2.01
SOX9P48436 AC006441.5-201ENST00000612680 209 ntBASIC2.52□□□□□ -2.01
SOX9P48436 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.52□□□□□ -2.01
SOX9P48436 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.51□□□□□ -2.01
SOX9P48436 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.51□□□□□ -2.01
SOX9P48436 RNA5SP276-201ENST00000362580 94 ntBASIC2.51□□□□□ -2.01
SOX9P48436 RNU6-888P-201ENST00000363010 101 ntBASIC2.51□□□□□ -2.01
SOX9P48436 RNU6-424P-201ENST00000384367 105 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 176.3 ms