Protein–RNA interactions for Protein: P48378

RFX2, DNA-binding protein RFX2, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX2P48378 OR9P1P-201ENST00000496431 281 ntBASIC1.76□□□□□ -2.13
RFX2P48378 MRPS17P9-201ENST00000511924 393 ntBASIC1.76□□□□□ -2.13
RFX2P48378 SNORA31.10-201ENST00000516482 106 ntBASIC1.76□□□□□ -2.13
RFX2P48378 SCARNA16.3-201ENST00000516595 184 ntBASIC1.76□□□□□ -2.13
RFX2P48378 RNU6-197P-201ENST00000516680 100 ntBASIC1.76□□□□□ -2.13
RFX2P48378 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.76□□□□□ -2.13
RFX2P48378 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC1.76□□□□□ -2.13
RFX2P48378 DNAJC19P2-201ENST00000593340 302 ntBASIC1.76□□□□□ -2.13
RFX2P48378 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
RFX2P48378 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.75□□□□□ -2.13
RFX2P48378 RNU6-525P-201ENST00000363685 104 ntBASIC1.75□□□□□ -2.13
RFX2P48378 SNORA5B-201ENST00000363786 132 ntBASIC1.75□□□□□ -2.13
RFX2P48378 RNU2-55P-201ENST00000411146 174 ntBASIC1.75□□□□□ -2.13
RFX2P48378 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.75□□□□□ -2.13
RFX2P48378 RNA5SP272-201ENST00000516095 111 ntBASIC1.75□□□□□ -2.13
RFX2P48378 RNA5SP437-201ENST00000517249 129 ntBASIC1.75□□□□□ -2.13
RFX2P48378 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC1.75□□□□□ -2.13
RFX2P48378 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC1.75□□□□□ -2.13
RFX2P48378 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.74□□□□□ -2.13
RFX2P48378 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.74□□□□□ -2.13
RFX2P48378 Y_RNA.215-201ENST00000364204 112 ntBASIC1.74□□□□□ -2.13
RFX2P48378 SNORA63D-201ENST00000364359 132 ntBASIC1.74□□□□□ -2.13
RFX2P48378 Y_RNA.634-201ENST00000364811 113 ntBASIC1.74□□□□□ -2.13
RFX2P48378 RNU6-1336P-201ENST00000383886 109 ntBASIC1.74□□□□□ -2.13
RFX2P48378 Y_RNA.486-201ENST00000384398 107 ntBASIC1.74□□□□□ -2.13
RFX2P48378 MIR17-201ENST00000385012 84 ntBASIC1.74□□□□□ -2.13
RFX2P48378 SNORD37.2-201ENST00000391075 66 ntBASIC1.74□□□□□ -2.13
RFX2P48378 NDUFB4P4-201ENST00000404822 243 ntBASIC1.74□□□□□ -2.13
RFX2P48378 RNU2-7P-201ENST00000410794 178 ntBASIC1.74□□□□□ -2.13
RFX2P48378 AL158823.1-201ENST00000418441 478 ntBASIC1.74□□□□□ -2.13
RFX2P48378 AC069257.2-201ENST00000441819 155 ntBASIC1.74□□□□□ -2.13
RFX2P48378 AL392103.1-201ENST00000447000 198 ntBASIC1.74□□□□□ -2.13
RFX2P48378 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.74□□□□□ -2.13
RFX2P48378 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC1.74□□□□□ -2.13
RFX2P48378 SUB1P4-201ENST00000566062 339 ntBASIC1.74□□□□□ -2.13
RFX2P48378 MIR4529-201ENST00000578110 78 ntBASIC1.74□□□□□ -2.13
RFX2P48378 MIR378D2-201ENST00000580636 98 ntBASIC1.74□□□□□ -2.13
RFX2P48378 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.74□□□□□ -2.13
RFX2P48378 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC1.74□□□□□ -2.13
RFX2P48378 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.73□□□□□ -2.13
RFX2P48378 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
RFX2P48378 RNU6-199P-201ENST00000362954 107 ntBASIC1.73□□□□□ -2.13
RFX2P48378 SNORA80A-201ENST00000363922 136 ntBASIC1.73□□□□□ -2.13
RFX2P48378 SNORD50B-201ENST00000364995 70 ntBASIC1.73□□□□□ -2.13
RFX2P48378 RNU6-1138P-201ENST00000365359 106 ntBASIC1.73□□□□□ -2.13
RFX2P48378 Y_RNA.488-201ENST00000384403 102 ntBASIC1.73□□□□□ -2.13
RFX2P48378 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.73□□□□□ -2.13
RFX2P48378 FTH1P12-201ENST00000432137 551 ntBASIC1.73□□□□□ -2.13
RFX2P48378 AC055731.1-201ENST00000474387 401 ntBASIC1.73□□□□□ -2.13
RFX2P48378 RPL23AP63-201ENST00000498752 471 ntBASIC1.73□□□□□ -2.13
RFX2P48378 SNORA25.12-201ENST00000516202 82 ntBASIC1.73□□□□□ -2.13
RFX2P48378 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC1.73□□□□□ -2.13
RFX2P48378 AC091544.4-201ENST00000555268 342 ntBASIC1.73□□□□□ -2.13
RFX2P48378 MIR3910-1-201ENST00000580936 111 ntBASIC1.73□□□□□ -2.13
RFX2P48378 AC008507.4-201ENST00000585464 127 ntBASIC1.73□□□□□ -2.13
RFX2P48378 AC120024.3-201ENST00000603167 156 ntBASIC1.73□□□□□ -2.13
RFX2P48378 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.73□□□□□ -2.13
RFX2P48378 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.73□□□□□ -2.13
RFX2P48378 ICE2P2-201ENST00000483823 2787 ntBASIC1.72□□□□□ -2.13
RFX2P48378 RNU6-1084P-201ENST00000362498 107 ntBASIC1.72□□□□□ -2.13
RFX2P48378 RNU6-112P-201ENST00000363599 104 ntBASIC1.72□□□□□ -2.13
RFX2P48378 Y_RNA.393-201ENST00000383936 102 ntBASIC1.72□□□□□ -2.13
RFX2P48378 RNU6-296P-201ENST00000384608 107 ntBASIC1.72□□□□□ -2.13
RFX2P48378 MIR520A-201ENST00000384862 85 ntBASIC1.72□□□□□ -2.13
RFX2P48378 RNA5SP482-201ENST00000391269 118 ntBASIC1.72□□□□□ -2.13
RFX2P48378 RNA5SP233-201ENST00000459153 113 ntBASIC1.72□□□□□ -2.13
RFX2P48378 RNU6-426P-201ENST00000516464 97 ntBASIC1.72□□□□□ -2.13
RFX2P48378 RNA5SP153-201ENST00000516498 76 ntBASIC1.72□□□□□ -2.13
RFX2P48378 Y_RNA.714-201ENST00000517065 90 ntBASIC1.72□□□□□ -2.13
RFX2P48378 RNU6-1116P-201ENST00000517269 99 ntBASIC1.72□□□□□ -2.13
RFX2P48378 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.72□□□□□ -2.13
RFX2P48378 MIR3122-201ENST00000577243 73 ntBASIC1.72□□□□□ -2.13
RFX2P48378 MIR4662B-201ENST00000579498 81 ntBASIC1.72□□□□□ -2.13
RFX2P48378 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.72□□□□□ -2.13
RFX2P48378 MIR6844-201ENST00000637122 62 ntBASIC1.72□□□□□ -2.13
RFX2P48378 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC1.72□□□□□ -2.13
RFX2P48378 AC131280.1-202ENST00000624067 4211 ntBASIC1.71□□□□□ -2.14
RFX2P48378 RNA5SP289-201ENST00000362332 137 ntBASIC1.71□□□□□ -2.14
RFX2P48378 RNU6-704P-201ENST00000364162 103 ntBASIC1.71□□□□□ -2.14
RFX2P48378 RNU6-978P-201ENST00000364371 103 ntBASIC1.71□□□□□ -2.14
RFX2P48378 RNU6-1082P-201ENST00000364574 107 ntBASIC1.71□□□□□ -2.14
RFX2P48378 MIR569-201ENST00000385228 96 ntBASIC1.71□□□□□ -2.14
RFX2P48378 MIR613-201ENST00000385248 95 ntBASIC1.71□□□□□ -2.14
RFX2P48378 MIR802-201ENST00000390235 94 ntBASIC1.71□□□□□ -2.14
RFX2P48378 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.71□□□□□ -2.14
RFX2P48378 RNU6-588P-201ENST00000410281 105 ntBASIC1.71□□□□□ -2.14
RFX2P48378 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC1.71□□□□□ -2.14
RFX2P48378 RNU2-19P-201ENST00000517288 84 ntBASIC1.71□□□□□ -2.14
RFX2P48378 EIF4BP1-201ENST00000554881 351 ntBASIC1.71□□□□□ -2.14
RFX2P48378 AL160236.1-201ENST00000556317 195 ntBASIC1.71□□□□□ -2.14
RFX2P48378 AC112693.2-201ENST00000556538 232 ntBASIC1.71□□□□□ -2.14
RFX2P48378 MIR548X2-201ENST00000579776 100 ntBASIC1.71□□□□□ -2.14
RFX2P48378 MIR4762-201ENST00000585261 75 ntBASIC1.71□□□□□ -2.14
RFX2P48378 AC097639.2-201ENST00000603159 172 ntBASIC1.71□□□□□ -2.14
RFX2P48378 U1.36-201ENST00000620684 176 ntBASIC1.71□□□□□ -2.14
RFX2P48378 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.71□□□□□ -2.14
RFX2P48378 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.14
RFX2P48378 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.71□□□□□ -2.14
RFX2P48378 RNA5SP276-201ENST00000362580 94 ntBASIC1.7□□□□□ -2.14
RFX2P48378 RNY1P11-201ENST00000363759 113 ntBASIC1.7□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 121.5 ms