Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MIR126-201ENST00000362291 85 ntBASIC2.35□□□□□ -2.03
MSX2P35548 SNORA1B-201ENST00000362535 133 ntBASIC2.35□□□□□ -2.03
MSX2P35548 MIR522-201ENST00000385071 87 ntBASIC2.35□□□□□ -2.03
MSX2P35548 Y_RNA.666-201ENST00000516187 112 ntBASIC2.35□□□□□ -2.03
MSX2P35548 RNU6-1270P-201ENST00000517128 108 ntBASIC2.35□□□□□ -2.03
MSX2P35548 GTF3AP2-201ENST00000557014 266 ntBASIC2.35□□□□□ -2.03
MSX2P35548 AC087685.1-201ENST00000587507 141 ntBASIC2.35□□□□□ -2.03
MSX2P35548 MTND5P32-201ENST00000560711 1802 ntBASIC2.35□□□□□ -2.03
MSX2P35548 CEP57L1-213ENST00000520883 2055 ntTSL 5 BASIC2.34□□□□□ -2.03
MSX2P35548 RNA5SP126-201ENST00000365092 109 ntBASIC2.34□□□□□ -2.03
MSX2P35548 RNU6-160P-201ENST00000384591 107 ntBASIC2.34□□□□□ -2.03
MSX2P35548 AC063976.4-201ENST00000421971 163 ntBASIC2.34□□□□□ -2.03
MSX2P35548 FTH1P12-201ENST00000432137 551 ntBASIC2.34□□□□□ -2.03
MSX2P35548 AF228730.3-201ENST00000436691 102 ntBASIC2.34□□□□□ -2.03
MSX2P35548 AC011753.1-201ENST00000451001 220 ntBASIC2.34□□□□□ -2.03
MSX2P35548 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC2.34□□□□□ -2.03
MSX2P35548 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.34□□□□□ -2.03
MSX2P35548 CYCTP-201ENST00000504253 315 ntBASIC2.34□□□□□ -2.03
MSX2P35548 AC096725.1-201ENST00000514266 313 ntBASIC2.34□□□□□ -2.03
MSX2P35548 RNU5E-3P-201ENST00000515913 68 ntBASIC2.34□□□□□ -2.03
MSX2P35548 RNA5SP82-201ENST00000516707 92 ntBASIC2.34□□□□□ -2.03
MSX2P35548 MIR4672-201ENST00000583126 81 ntBASIC2.34□□□□□ -2.03
MSX2P35548 AL670379.3-201ENST00000605040 251 ntBASIC2.34□□□□□ -2.03
MSX2P35548 AC022202.1-201ENST00000613515 211 ntBASIC2.34□□□□□ -2.03
MSX2P35548 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.04
MSX2P35548 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.34□□□□□ -2.04
MSX2P35548 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.34□□□□□ -2.04
MSX2P35548 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.34□□□□□ -2.04
MSX2P35548 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.33□□□□□ -2.04
MSX2P35548 SNORA8-201ENST00000384574 139 ntBASIC2.33□□□□□ -2.04
MSX2P35548 MIR524-201ENST00000385242 87 ntBASIC2.33□□□□□ -2.04
MSX2P35548 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.33□□□□□ -2.04
MSX2P35548 CST2P1-201ENST00000425770 87 ntBASIC2.33□□□□□ -2.04
MSX2P35548 AL513328.1-201ENST00000446460 224 ntBASIC2.33□□□□□ -2.04
MSX2P35548 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.33□□□□□ -2.04
MSX2P35548 AL163195.1-201ENST00000496941 348 ntBASIC2.33□□□□□ -2.04
MSX2P35548 RNA5SP356-201ENST00000515972 94 ntBASIC2.33□□□□□ -2.04
MSX2P35548 RN7SKP19-201ENST00000516016 252 ntBASIC2.33□□□□□ -2.04
MSX2P35548 RNA5SP137-201ENST00000516833 135 ntBASIC2.33□□□□□ -2.04
MSX2P35548 AC024995.1-201ENST00000523014 93 ntBASIC2.33□□□□□ -2.04
MSX2P35548 IGKV1-22-201ENST00000524313 326 ntBASIC2.33□□□□□ -2.04
MSX2P35548 AP002004.2-201ENST00000531656 154 ntBASIC2.33□□□□□ -2.04
MSX2P35548 AC091544.4-201ENST00000555268 342 ntBASIC2.33□□□□□ -2.04
MSX2P35548 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.33□□□□□ -2.04
MSX2P35548 ZNF720P1-201ENST00000562403 1939 ntBASIC2.32□□□□□ -2.04
MSX2P35548 MIER3-202ENST00000381199 5188 ntAPPRIS ALT1 TSL 1 (best) BASIC2.32□□□□□ -2.04
MSX2P35548 RNU6-862P-201ENST00000362804 105 ntBASIC2.32□□□□□ -2.04
MSX2P35548 RNA5SP493-201ENST00000364115 91 ntBASIC2.32□□□□□ -2.04
MSX2P35548 MIR515-2-201ENST00000384883 83 ntBASIC2.32□□□□□ -2.04
MSX2P35548 MIR515-1-201ENST00000384884 83 ntBASIC2.32□□□□□ -2.04
MSX2P35548 MIR518F-201ENST00000384973 87 ntBASIC2.32□□□□□ -2.04
MSX2P35548 RNA5SP323-201ENST00000391094 133 ntBASIC2.32□□□□□ -2.04
MSX2P35548 SNORD77.3-201ENST00000391113 65 ntBASIC2.32□□□□□ -2.04
MSX2P35548 AC099677.2-201ENST00000436385 175 ntBASIC2.32□□□□□ -2.04
MSX2P35548 MTATP6P21-201ENST00000440681 189 ntBASIC2.32□□□□□ -2.04
MSX2P35548 SNRPGP13-201ENST00000442212 177 ntBASIC2.32□□□□□ -2.04
MSX2P35548 SCARNA15-202ENST00000516881 127 ntBASIC2.32□□□□□ -2.04
MSX2P35548 AC026271.5-201ENST00000577873 130 ntBASIC2.32□□□□□ -2.04
MSX2P35548 MIR3169-201ENST00000578032 83 ntBASIC2.32□□□□□ -2.04
MSX2P35548 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.32□□□□□ -2.04
MSX2P35548 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
MSX2P35548 RNA5SP456-201ENST00000364002 114 ntBASIC2.31□□□□□ -2.04
MSX2P35548 SNORA22-201ENST00000383907 134 ntBASIC2.31□□□□□ -2.04
MSX2P35548 RN7SKP284-201ENST00000411002 343 ntBASIC2.31□□□□□ -2.04
MSX2P35548 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.31□□□□□ -2.04
MSX2P35548 AL021397.1-201ENST00000451806 248 ntBASIC2.31□□□□□ -2.04
MSX2P35548 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.31□□□□□ -2.04
MSX2P35548 RNU7-94P-201ENST00000459576 63 ntBASIC2.31□□□□□ -2.04
MSX2P35548 AL049830.1-201ENST00000468034 425 ntBASIC2.31□□□□□ -2.04
MSX2P35548 TRBV12-1-201ENST00000479785 344 ntBASIC2.31□□□□□ -2.04
MSX2P35548 RNU6-693P-201ENST00000516134 107 ntBASIC2.31□□□□□ -2.04
MSX2P35548 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.31□□□□□ -2.04
MSX2P35548 MIR4762-201ENST00000585261 75 ntBASIC2.31□□□□□ -2.04
MSX2P35548 ELOCP29-201ENST00000588193 334 ntBASIC2.31□□□□□ -2.04
MSX2P35548 AC022513.1-201ENST00000624512 117 ntBASIC2.31□□□□□ -2.04
MSX2P35548 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.31□□□□□ -2.04
MSX2P35548 MIR376A2-201ENST00000636782 80 ntBASIC2.31□□□□□ -2.04
MSX2P35548 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.31□□□□□ -2.04
MSX2P35548 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
MSX2P35548 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.3□□□□□ -2.04
MSX2P35548 Y_RNA.35-201ENST00000362601 101 ntBASIC2.3□□□□□ -2.04
MSX2P35548 SNORD116-21-201ENST00000384507 92 ntBASIC2.3□□□□□ -2.04
MSX2P35548 SNORA80E-201ENST00000384744 137 ntBASIC2.3□□□□□ -2.04
MSX2P35548 MIR548A3-201ENST00000385297 97 ntBASIC2.3□□□□□ -2.04
MSX2P35548 RNA5SP270-201ENST00000411361 118 ntBASIC2.3□□□□□ -2.04
MSX2P35548 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.3□□□□□ -2.04
MSX2P35548 RNU7-193P-201ENST00000516723 65 ntBASIC2.3□□□□□ -2.04
MSX2P35548 RNU6-1149P-201ENST00000516810 97 ntBASIC2.3□□□□□ -2.04
MSX2P35548 AC022217.4-201ENST00000604389 163 ntBASIC2.3□□□□□ -2.04
MSX2P35548 AC025166.1-201ENST00000612411 163 ntBASIC2.3□□□□□ -2.04
MSX2P35548 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
MSX2P35548 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.3□□□□□ -2.04
MSX2P35548 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.3□□□□□ -2.04
MSX2P35548 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.29□□□□□ -2.04
MSX2P35548 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
MSX2P35548 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
MSX2P35548 Y_RNA.242-201ENST00000364473 110 ntBASIC2.29□□□□□ -2.04
MSX2P35548 U8.5-201ENST00000364528 136 ntBASIC2.29□□□□□ -2.04
MSX2P35548 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.29□□□□□ -2.04
MSX2P35548 AL606517.2-201ENST00000442855 241 ntBASIC2.29□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 140.2 ms