Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 AC090142.3-201ENST00000519012 385 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 MIR3145-201ENST00000580727 82 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 RNU4-79P-201ENST00000362764 141 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 RNU1-115P-201ENST00000365329 160 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 AL390729.2-201ENST00000416137 156 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 U8.19-201ENST00000459095 133 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 RNU4-57P-201ENST00000515980 135 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 RNU7-43P-201ENST00000516554 64 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 Y_RNA.713-201ENST00000517013 96 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.62□□□□□ -2.31
SCN1AP35498 MIR4778-201ENST00000577635 80 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 BX284668.6-201ENST00000606899 438 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 Pinc.1-201ENST00000616452 154 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 AL442644.1-201ENST00000454390 3105 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.61□□□□□ -2.31
SCN1AP35498 Y_RNA.303-201ENST00000364998 94 ntBASIC0.61□□□□□ -2.31
SCN1AP35498 Y_RNA.645-201ENST00000391229 102 ntBASIC0.61□□□□□ -2.31
SCN1AP35498 MCFD2P1-201ENST00000417812 300 ntBASIC0.61□□□□□ -2.31
SCN1AP35498 AC005534.2-201ENST00000431047 433 ntBASIC0.61□□□□□ -2.31
SCN1AP35498 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC0.61□□□□□ -2.31
SCN1AP35498 RNU7-141P-201ENST00000459304 62 ntBASIC0.61□□□□□ -2.31
SCN1AP35498 MTND3P22-201ENST00000510932 243 ntBASIC0.61□□□□□ -2.31
SCN1AP35498 RN7SKP295-201ENST00000517264 153 ntBASIC0.61□□□□□ -2.31
SCN1AP35498 AC011373.1-201ENST00000607270 237 ntBASIC0.61□□□□□ -2.31
SCN1AP35498 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.61□□□□□ -2.31
SCN1AP35498 AC068647.2-201ENST00000637380 353 ntBASIC0.61□□□□□ -2.31
SCN1AP35498 SNORA25.3-201ENST00000363205 127 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 Y_RNA.230-201ENST00000364348 109 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 Y_RNA.363-201ENST00000365529 113 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 SNORA63.7-201ENST00000365579 123 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 Y_RNA.370-201ENST00000365589 108 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 Y_RNA.384-201ENST00000383909 102 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 RNU6-310P-201ENST00000384655 107 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 MIR92A1-201ENST00000385233 78 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 MT-TD-201ENST00000387419 68 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 AL606490.4-201ENST00000423117 127 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 SNORA25.10-201ENST00000515926 124 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 AC136932.1-201ENST00000574771 208 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 MIR4661-201ENST00000582720 75 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 AC127459.3-201ENST00000624328 466 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 Y_RNA.197-201ENST00000364004 102 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 Y_RNA.445-201ENST00000384168 102 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 RNU6-1297P-201ENST00000384415 104 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 MIR100-201ENST00000385259 80 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 RNU6-130P-201ENST00000411112 103 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 POLR2KP2-201ENST00000438155 177 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 SNORD19B-201ENST00000459623 84 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.6□□□□□ -2.31
SCN1AP35498 RNU7-115P-201ENST00000516433 55 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 RN7SL793P-201ENST00000583259 296 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 MIR1302-1-201ENST00000637932 143 ntBASIC0.6□□□□□ -2.31
SCN1AP35498 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC0.59□□□□□ -2.31
SCN1AP35498 Y_RNA.222-201ENST00000364264 102 ntBASIC0.59□□□□□ -2.31
SCN1AP35498 RNU1-119P-201ENST00000391122 165 ntBASIC0.59□□□□□ -2.31
SCN1AP35498 MIR1197-201ENST00000408818 88 ntBASIC0.59□□□□□ -2.31
SCN1AP35498 RPL21P38-201ENST00000418090 167 ntBASIC0.59□□□□□ -2.31
SCN1AP35498 SNORA74.3-201ENST00000517108 154 ntBASIC0.59□□□□□ -2.31
SCN1AP35498 AC024405.2-202ENST00000532731 184 ntBASIC0.59□□□□□ -2.31
SCN1AP35498 AC004812.1-201ENST00000540773 146 ntBASIC0.59□□□□□ -2.31
SCN1AP35498 AC005357.1-201ENST00000588399 301 ntBASIC0.59□□□□□ -2.31
SCN1AP35498 MIR6513-201ENST00000621188 64 ntBASIC0.59□□□□□ -2.31
SCN1AP35498 uc_338.22-201ENST00000622722 187 ntBASIC0.59□□□□□ -2.31
SCN1AP35498 AC008133.2-201ENST00000624540 351 ntBASIC0.59□□□□□ -2.31
SCN1AP35498 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.59□□□□□ -2.32
SCN1AP35498 MIR330-201ENST00000362196 94 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 RNU6-1283P-201ENST00000365314 105 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 Y_RNA.551-201ENST00000384661 102 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 MIR522-201ENST00000385071 87 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 RNU6-308P-201ENST00000390957 107 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 Y_RNA.592-201ENST00000410274 109 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 RNU6-855P-201ENST00000410395 104 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 snoU13.21-201ENST00000459368 105 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 RNU7-41P-201ENST00000515917 61 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 RNU7-149P-201ENST00000516739 59 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 MIR548S-201ENST00000581352 82 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 MIR3192-201ENST00000584920 77 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 MIR4653-201ENST00000585107 83 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 AC092447.9-201ENST00000603395 144 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 AL080274.1-201ENST00000605565 220 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 AC010205.1-201ENST00000616668 449 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 7SK.10-201ENST00000621414 298 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 AL008636.1-201ENST00000625038 1018 ntBASIC0.59□□□□□ -2.32
SCN1AP35498 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.58□□□□□ -2.32
SCN1AP35498 MIR103A2-201ENST00000362154 78 ntBASIC0.58□□□□□ -2.32
SCN1AP35498 MIR369-201ENST00000362155 70 ntBASIC0.58□□□□□ -2.32
SCN1AP35498 MIR559-201ENST00000385188 96 ntBASIC0.58□□□□□ -2.32
SCN1AP35498 SNORA53-201ENST00000391141 249 ntBASIC0.58□□□□□ -2.32
SCN1AP35498 RNU7-110P-201ENST00000516891 62 ntBASIC0.58□□□□□ -2.32
SCN1AP35498 RNU7-116P-201ENST00000516940 62 ntBASIC0.58□□□□□ -2.32
SCN1AP35498 Y_RNA.715-201ENST00000517082 110 ntBASIC0.58□□□□□ -2.32
SCN1AP35498 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.58□□□□□ -2.32
SCN1AP35498 AC007742.2-201ENST00000618226 398 ntBASIC0.58□□□□□ -2.32
SCN1AP35498 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.58□□□□□ -2.32
SCN1AP35498 RNU6-1115P-201ENST00000362490 106 ntBASIC0.57□□□□□ -2.32
SCN1AP35498 RNU4-90P-201ENST00000362773 141 ntBASIC0.57□□□□□ -2.32
SCN1AP35498 RNU6-969P-201ENST00000383900 105 ntBASIC0.57□□□□□ -2.32
SCN1AP35498 Y_RNA.462-201ENST00000384268 102 ntBASIC0.57□□□□□ -2.32
SCN1AP35498 SNORA80D-201ENST00000384488 135 ntBASIC0.57□□□□□ -2.32
SCN1AP35498 MIR518A1-201ENST00000385068 85 ntBASIC0.57□□□□□ -2.32
SCN1AP35498 AC055872.1-201ENST00000570978 278 ntBASIC0.57□□□□□ -2.32
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms