Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.17□□□□□ -1.9
RFX1P22670 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC3.17□□□□□ -1.9
RFX1P22670 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
RFX1P22670 AL442644.1-201ENST00000454390 3105 ntBASIC3.17□□□□□ -1.9
RFX1P22670 MIRLET7C-201ENST00000362160 84 ntBASIC3.17□□□□□ -1.9
RFX1P22670 RNU4-82P-201ENST00000362443 140 ntBASIC3.17□□□□□ -1.9
RFX1P22670 RNU6-851P-201ENST00000384565 107 ntBASIC3.17□□□□□ -1.9
RFX1P22670 MIR196B-201ENST00000384852 84 ntBASIC3.17□□□□□ -1.9
RFX1P22670 MIR520A-201ENST00000384862 85 ntBASIC3.17□□□□□ -1.9
RFX1P22670 AL034345.1-201ENST00000407768 123 ntBASIC3.17□□□□□ -1.9
RFX1P22670 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC3.17□□□□□ -1.9
RFX1P22670 CYCTP-201ENST00000504253 315 ntBASIC3.17□□□□□ -1.9
RFX1P22670 RNA5SP236-201ENST00000516169 116 ntBASIC3.17□□□□□ -1.9
RFX1P22670 RNA5SP76-201ENST00000516277 87 ntBASIC3.17□□□□□ -1.9
RFX1P22670 RNVU1-2-201ENST00000516326 135 ntBASIC3.17□□□□□ -1.9
RFX1P22670 AC134878.1-201ENST00000619901 243 ntBASIC3.17□□□□□ -1.9
RFX1P22670 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC3.17□□□□□ -1.9
RFX1P22670 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.16□□□□□ -1.9
RFX1P22670 RNU6-647P-201ENST00000364243 107 ntBASIC3.16□□□□□ -1.9
RFX1P22670 RNU1-52P-201ENST00000384190 164 ntBASIC3.16□□□□□ -1.9
RFX1P22670 RNU5E-3P-201ENST00000515913 68 ntBASIC3.16□□□□□ -1.9
RFX1P22670 RNU6-772P-201ENST00000516042 105 ntBASIC3.16□□□□□ -1.9
RFX1P22670 MIR3914-2-201ENST00000637339 95 ntBASIC3.16□□□□□ -1.9
RFX1P22670 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.16□□□□□ -1.9
RFX1P22670 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
RFX1P22670 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC3.15□□□□□ -1.9
RFX1P22670 RNU6-1056P-201ENST00000383996 107 ntBASIC3.15□□□□□ -1.91
RFX1P22670 Y_RNA.651-201ENST00000459380 103 ntBASIC3.15□□□□□ -1.91
RFX1P22670 AC004486.1-201ENST00000546846 233 ntBASIC3.15□□□□□ -1.91
RFX1P22670 SNORD14A-201ENST00000606526 91 ntBASIC3.15□□□□□ -1.91
RFX1P22670 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC3.14□□□□□ -1.91
RFX1P22670 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
RFX1P22670 RNU6-1325P-201ENST00000364905 105 ntBASIC3.14□□□□□ -1.91
RFX1P22670 Y_RNA.547-201ENST00000384654 119 ntBASIC3.14□□□□□ -1.91
RFX1P22670 Y_RNA.617-201ENST00000410920 90 ntBASIC3.14□□□□□ -1.91
RFX1P22670 RNA5SP501-201ENST00000410990 112 ntBASIC3.14□□□□□ -1.91
RFX1P22670 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC3.14□□□□□ -1.91
RFX1P22670 RNU7-25P-201ENST00000516544 62 ntBASIC3.14□□□□□ -1.91
RFX1P22670 RNU6-1149P-201ENST00000516810 97 ntBASIC3.14□□□□□ -1.91
RFX1P22670 SCARNA15-202ENST00000516881 127 ntBASIC3.14□□□□□ -1.91
RFX1P22670 AC133485.4-201ENST00000561835 220 ntBASIC3.14□□□□□ -1.91
RFX1P22670 AC138907.4-201ENST00000570107 226 ntBASIC3.14□□□□□ -1.91
RFX1P22670 ZNF861P-201ENST00000588126 639 ntBASIC3.14□□□□□ -1.91
RFX1P22670 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
RFX1P22670 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
RFX1P22670 AC108206.1-201ENST00000570186 4159 ntBASIC3.13□□□□□ -1.91
RFX1P22670 RNU6-112P-201ENST00000363599 104 ntBASIC3.13□□□□□ -1.91
RFX1P22670 MIR512-1-201ENST00000384913 84 ntBASIC3.13□□□□□ -1.91
RFX1P22670 AL135938.1-201ENST00000443141 297 ntBASIC3.13□□□□□ -1.91
RFX1P22670 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.13□□□□□ -1.91
RFX1P22670 AC114811.1-201ENST00000507207 168 ntBASIC3.13□□□□□ -1.91
RFX1P22670 RNU6-919P-201ENST00000516731 104 ntBASIC3.13□□□□□ -1.91
RFX1P22670 SNORA31.25-201ENST00000517242 134 ntBASIC3.13□□□□□ -1.91
RFX1P22670 MIR376A2-201ENST00000636782 80 ntBASIC3.13□□□□□ -1.91
RFX1P22670 Clostridiales-1.3-201ENST00000637703 147 ntBASIC3.13□□□□□ -1.91
RFX1P22670 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
RFX1P22670 AKAP9-202ENST00000358100 10309 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
RFX1P22670 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.12□□□□□ -1.91
RFX1P22670 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.12□□□□□ -1.91
RFX1P22670 VTRNA1-1-201ENST00000363120 99 ntBASIC3.12□□□□□ -1.91
RFX1P22670 SNORD115-28-201ENST00000363931 81 ntBASIC3.12□□□□□ -1.91
RFX1P22670 RNU6-163P-201ENST00000384396 106 ntBASIC3.12□□□□□ -1.91
RFX1P22670 RNU6-296P-201ENST00000384608 107 ntBASIC3.12□□□□□ -1.91
RFX1P22670 SNORA40.5-201ENST00000391061 128 ntBASIC3.12□□□□□ -1.91
RFX1P22670 RNU6-1064P-201ENST00000410626 104 ntBASIC3.12□□□□□ -1.91
RFX1P22670 AL139132.1-201ENST00000431587 344 ntBASIC3.12□□□□□ -1.91
RFX1P22670 RPS29P6-201ENST00000438196 145 ntBASIC3.12□□□□□ -1.91
RFX1P22670 HSPE1P9-201ENST00000440046 311 ntBASIC3.12□□□□□ -1.91
RFX1P22670 AL021397.1-201ENST00000451806 248 ntBASIC3.12□□□□□ -1.91
RFX1P22670 RNU6-1061P-201ENST00000516530 99 ntBASIC3.12□□□□□ -1.91
RFX1P22670 RNU6-113P-201ENST00000516653 101 ntBASIC3.12□□□□□ -1.91
RFX1P22670 RNA5SP481-201ENST00000516814 122 ntBASIC3.12□□□□□ -1.91
RFX1P22670 RNU6-1116P-201ENST00000517269 99 ntBASIC3.12□□□□□ -1.91
RFX1P22670 AC079600.2-201ENST00000550076 130 ntBASIC3.12□□□□□ -1.91
RFX1P22670 MIR5197-201ENST00000583721 112 ntBASIC3.12□□□□□ -1.91
RFX1P22670 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC3.12□□□□□ -1.91
RFX1P22670 RNU6-833P-201ENST00000363486 107 ntBASIC3.11□□□□□ -1.91
RFX1P22670 RNU6-44P-201ENST00000384045 107 ntBASIC3.11□□□□□ -1.91
RFX1P22670 RNU6-424P-201ENST00000384367 105 ntBASIC3.11□□□□□ -1.91
RFX1P22670 RNU6-1031P-201ENST00000384773 107 ntBASIC3.11□□□□□ -1.91
RFX1P22670 AC007064.1-201ENST00000412238 351 ntBASIC3.11□□□□□ -1.91
RFX1P22670 AL035461.1-201ENST00000421490 332 ntBASIC3.11□□□□□ -1.91
RFX1P22670 AC087499.2-201ENST00000432861 149 ntBASIC3.11□□□□□ -1.91
RFX1P22670 AC087499.4-201ENST00000448505 178 ntBASIC3.11□□□□□ -1.91
RFX1P22670 RNU6-830P-201ENST00000516353 107 ntBASIC3.11□□□□□ -1.91
RFX1P22670 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC3.11□□□□□ -1.91
RFX1P22670 U6.95-201ENST00000636931 70 ntBASIC3.11□□□□□ -1.91
RFX1P22670 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC3.1□□□□□ -1.91
RFX1P22670 Y_RNA.37-201ENST00000362606 108 ntBASIC3.1□□□□□ -1.91
RFX1P22670 RNU6-1189P-201ENST00000383958 107 ntBASIC3.1□□□□□ -1.91
RFX1P22670 SNORD88.1-201ENST00000408684 91 ntBASIC3.1□□□□□ -1.91
RFX1P22670 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC3.1□□□□□ -1.91
RFX1P22670 SNORA9.3-201ENST00000516383 129 ntBASIC3.1□□□□□ -1.91
RFX1P22670 SCARNA16.3-201ENST00000516595 184 ntBASIC3.1□□□□□ -1.91
RFX1P22670 MIR4529-201ENST00000578110 78 ntBASIC3.1□□□□□ -1.91
RFX1P22670 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC3.1□□□□□ -1.91
RFX1P22670 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC3.09□□□□□ -1.91
RFX1P22670 AC062016.1-201ENST00000355719 319 ntBASIC3.09□□□□□ -1.91
RFX1P22670 SNORA3A-201ENST00000364113 130 ntBASIC3.09□□□□□ -1.91
RFX1P22670 SNORD58C-201ENST00000365223 64 ntBASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 106 ms