Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-338P-201ENST00000383888 105 ntBASIC1.51□□□□□ -2.17
MSH3P20585 AL034345.1-201ENST00000407768 123 ntBASIC1.51□□□□□ -2.17
MSH3P20585 MIR1304-201ENST00000408243 91 ntBASIC1.51□□□□□ -2.17
MSH3P20585 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.51□□□□□ -2.17
MSH3P20585 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.51□□□□□ -2.17
MSH3P20585 AC099513.1-201ENST00000490423 301 ntBASIC1.51□□□□□ -2.17
MSH3P20585 AC021506.2-201ENST00000612354 169 ntBASIC1.51□□□□□ -2.17
MSH3P20585 AL442067.1-201ENST00000613261 223 ntBASIC1.51□□□□□ -2.17
MSH3P20585 AL591926.4-201ENST00000616895 298 ntBASIC1.51□□□□□ -2.17
MSH3P20585 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
MSH3P20585 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.51□□□□□ -2.17
MSH3P20585 MIR126-201ENST00000362291 85 ntBASIC1.5□□□□□ -2.17
MSH3P20585 Y_RNA.65-201ENST00000362846 100 ntBASIC1.5□□□□□ -2.17
MSH3P20585 RNU6-379P-201ENST00000363813 104 ntBASIC1.5□□□□□ -2.17
MSH3P20585 RNY1-201ENST00000364228 113 ntBASIC1.5□□□□□ -2.17
MSH3P20585 Y_RNA.253-201ENST00000364562 112 ntBASIC1.5□□□□□ -2.17
MSH3P20585 Y_RNA.292-201ENST00000364904 97 ntBASIC1.5□□□□□ -2.17
MSH3P20585 RNY4P28-201ENST00000365281 93 ntBASIC1.5□□□□□ -2.17
MSH3P20585 RNU6-203P-201ENST00000384038 104 ntBASIC1.5□□□□□ -2.17
MSH3P20585 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
MSH3P20585 FTH1P12-201ENST00000432137 551 ntBASIC1.5□□□□□ -2.17
MSH3P20585 RNU7-34P-201ENST00000459394 64 ntBASIC1.5□□□□□ -2.17
MSH3P20585 HMGN1P7-201ENST00000491722 313 ntBASIC1.5□□□□□ -2.17
MSH3P20585 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.5□□□□□ -2.17
MSH3P20585 MIR8074-201ENST00000615081 81 ntBASIC1.5□□□□□ -2.17
MSH3P20585 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC1.5□□□□□ -2.17
MSH3P20585 RNU6-1209P-201ENST00000363655 107 ntBASIC1.49□□□□□ -2.17
MSH3P20585 RNU1-42P-201ENST00000364033 160 ntBASIC1.49□□□□□ -2.17
MSH3P20585 RNU6-60P-201ENST00000364792 103 ntBASIC1.49□□□□□ -2.17
MSH3P20585 Y_RNA.293-201ENST00000364908 93 ntBASIC1.49□□□□□ -2.17
MSH3P20585 RNU6-969P-201ENST00000383900 105 ntBASIC1.49□□□□□ -2.17
MSH3P20585 MIR194-1-201ENST00000384892 85 ntBASIC1.49□□□□□ -2.17
MSH3P20585 MIR526A2-201ENST00000390198 65 ntBASIC1.49□□□□□ -2.17
MSH3P20585 RNU6-482P-201ENST00000391068 107 ntBASIC1.49□□□□□ -2.17
MSH3P20585 MIR1323-201ENST00000408090 73 ntBASIC1.49□□□□□ -2.17
MSH3P20585 MIR1278-201ENST00000408753 81 ntBASIC1.49□□□□□ -2.17
MSH3P20585 AL161935.2-201ENST00000414627 60 ntBASIC1.49□□□□□ -2.17
MSH3P20585 JTBP1-201ENST00000441314 247 ntBASIC1.49□□□□□ -2.17
MSH3P20585 RNU4-71P-201ENST00000516258 113 ntBASIC1.49□□□□□ -2.17
MSH3P20585 SNORA31.24-201ENST00000517232 57 ntBASIC1.49□□□□□ -2.17
MSH3P20585 MIR5688-201ENST00000580619 83 ntBASIC1.49□□□□□ -2.17
MSH3P20585 MIR2681-201ENST00000581814 105 ntBASIC1.49□□□□□ -2.17
MSH3P20585 MIR4762-201ENST00000585261 75 ntBASIC1.49□□□□□ -2.17
MSH3P20585 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC1.49□□□□□ -2.17
MSH3P20585 AL365265.1-201ENST00000621045 234 ntBASIC1.49□□□□□ -2.17
MSH3P20585 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.49□□□□□ -2.17
MSH3P20585 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.48□□□□□ -2.17
MSH3P20585 MIRLET7C-201ENST00000362160 84 ntBASIC1.48□□□□□ -2.17
MSH3P20585 RNU6-414P-201ENST00000363705 104 ntBASIC1.48□□□□□ -2.17
MSH3P20585 Y_RNA.796-201ENST00000364268 102 ntBASIC1.48□□□□□ -2.17
MSH3P20585 U8.5-201ENST00000364528 136 ntBASIC1.48□□□□□ -2.17
MSH3P20585 Y_RNA.799-201ENST00000364992 102 ntBASIC1.48□□□□□ -2.17
MSH3P20585 Y_RNA.476-201ENST00000384347 108 ntBASIC1.48□□□□□ -2.17
MSH3P20585 MIR626-201ENST00000385032 94 ntBASIC1.48□□□□□ -2.17
MSH3P20585 MIR522-201ENST00000385071 87 ntBASIC1.48□□□□□ -2.17
MSH3P20585 RNU6-383P-201ENST00000410864 94 ntBASIC1.48□□□□□ -2.17
MSH3P20585 RNU1-98P-201ENST00000458992 160 ntBASIC1.48□□□□□ -2.17
MSH3P20585 AC005908.1-201ENST00000468701 347 ntBASIC1.48□□□□□ -2.17
MSH3P20585 SNORA77B-201ENST00000578179 125 ntBASIC1.48□□□□□ -2.17
MSH3P20585 MIR4724-201ENST00000579485 89 ntBASIC1.48□□□□□ -2.17
MSH3P20585 Y_RNA.802-201ENST00000614892 130 ntBASIC1.48□□□□□ -2.17
MSH3P20585 AC095038.3-201ENST00000634439 195 ntBASIC1.48□□□□□ -2.17
MSH3P20585 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
MSH3P20585 RNU6-653P-201ENST00000363074 106 ntBASIC1.47□□□□□ -2.17
MSH3P20585 RNU6-457P-201ENST00000363999 107 ntBASIC1.47□□□□□ -2.17
MSH3P20585 RNU4-10P-201ENST00000364383 140 ntBASIC1.47□□□□□ -2.17
MSH3P20585 RNU6-424P-201ENST00000384367 105 ntBASIC1.47□□□□□ -2.17
MSH3P20585 SNORA8.3-201ENST00000384679 139 ntBASIC1.47□□□□□ -2.17
MSH3P20585 MIR320A-201ENST00000385302 82 ntBASIC1.47□□□□□ -2.17
MSH3P20585 CALM2P4-201ENST00000430810 426 ntBASIC1.47□□□□□ -2.17
MSH3P20585 COX6CP14-201ENST00000469580 174 ntBASIC1.47□□□□□ -2.17
MSH3P20585 RNA5SP168-201ENST00000516642 112 ntBASIC1.47□□□□□ -2.17
MSH3P20585 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.47□□□□□ -2.17
MSH3P20585 AC100767.1-201ENST00000528178 123 ntBASIC1.47□□□□□ -2.17
MSH3P20585 MIR4303-201ENST00000581299 66 ntBASIC1.47□□□□□ -2.17
MSH3P20585 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC1.47□□□□□ -2.17
MSH3P20585 AL645939.4-201ENST00000604495 135 ntBASIC1.47□□□□□ -2.17
MSH3P20585 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
MSH3P20585 MIR367-201ENST00000362299 68 ntBASIC1.46□□□□□ -2.18
MSH3P20585 Y_RNA.24-201ENST00000362508 103 ntBASIC1.46□□□□□ -2.18
MSH3P20585 SNORD68-201ENST00000363214 84 ntBASIC1.46□□□□□ -2.18
MSH3P20585 U8.16-201ENST00000391279 133 ntBASIC1.46□□□□□ -2.18
MSH3P20585 RN7SKP51-201ENST00000410781 304 ntBASIC1.46□□□□□ -2.18
MSH3P20585 Y_RNA.626-201ENST00000411288 95 ntBASIC1.46□□□□□ -2.18
MSH3P20585 RPL30P13-201ENST00000418873 348 ntBASIC1.46□□□□□ -2.18
MSH3P20585 AL354695.1-201ENST00000427935 228 ntBASIC1.46□□□□□ -2.18
MSH3P20585 SNRPGP10-201ENST00000432323 225 ntBASIC1.46□□□□□ -2.18
MSH3P20585 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.46□□□□□ -2.18
MSH3P20585 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.46□□□□□ -2.18
MSH3P20585 RPL23AP91-201ENST00000569211 455 ntBASIC1.46□□□□□ -2.18
MSH3P20585 AC009779.6-201ENST00000603972 165 ntBASIC1.46□□□□□ -2.18
MSH3P20585 AC141273.2-201ENST00000618989 130 ntBASIC1.46□□□□□ -2.18
MSH3P20585 AL513423.1-201ENST00000621695 132 ntBASIC1.46□□□□□ -2.18
MSH3P20585 RNU6-1123P-201ENST00000362347 106 ntBASIC1.45□□□□□ -2.18
MSH3P20585 Y_RNA.262-201ENST00000364641 102 ntBASIC1.45□□□□□ -2.18
MSH3P20585 Y_RNA.572-201ENST00000384757 98 ntBASIC1.45□□□□□ -2.18
MSH3P20585 SNORA17.3-201ENST00000391159 129 ntBASIC1.45□□□□□ -2.18
MSH3P20585 RNA5SP496-201ENST00000391240 109 ntBASIC1.45□□□□□ -2.18
MSH3P20585 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.45□□□□□ -2.18
MSH3P20585 MIR1267-201ENST00000408723 78 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 178.7 ms