Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 RNU6-187P-201ENST00000384139 106 ntBASIC-0.56□□□□□ -2.5
TPM1P09493 SNORD38B-201ENST00000384690 67 ntBASIC-0.56□□□□□ -2.5
TPM1P09493 AL358176.2-201ENST00000425769 204 ntBASIC-0.56□□□□□ -2.5
TPM1P09493 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC-0.56□□□□□ -2.5
TPM1P09493 AC011352.1-201ENST00000512300 793 ntBASIC-0.56□□□□□ -2.5
TPM1P09493 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC-0.56□□□□□ -2.5
TPM1P09493 AC134878.1-201ENST00000619901 243 ntBASIC-0.56□□□□□ -2.5
TPM1P09493 MIR6828-201ENST00000636181 60 ntBASIC-0.56□□□□□ -2.5
TPM1P09493 RNU6-1323P-201ENST00000384025 107 ntBASIC-0.57□□□□□ -2.5
TPM1P09493 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC-0.57□□□□□ -2.5
TPM1P09493 AC236972.2-201ENST00000434979 310 ntBASIC-0.57□□□□□ -2.5
TPM1P09493 RNU6-782P-201ENST00000516852 104 ntBASIC-0.57□□□□□ -2.5
TPM1P09493 RNU1-54P-201ENST00000517181 120 ntBASIC-0.57□□□□□ -2.5
TPM1P09493 AC055872.1-201ENST00000570978 278 ntBASIC-0.57□□□□□ -2.5
TPM1P09493 DLEU2_1.1-201ENST00000612089 120 ntBASIC-0.57□□□□□ -2.5
TPM1P09493 MIR8087-201ENST00000612745 78 ntBASIC-0.57□□□□□ -2.5
TPM1P09493 DLEU2_1.2-201ENST00000614667 120 ntBASIC-0.57□□□□□ -2.5
TPM1P09493 MIR588-201ENST00000384900 83 ntBASIC-0.58□□□□□ -2.5
TPM1P09493 SNORD5.1-201ENST00000458800 75 ntBASIC-0.58□□□□□ -2.5
TPM1P09493 RNU7-159P-201ENST00000459284 62 ntBASIC-0.58□□□□□ -2.5
TPM1P09493 MIR1273G-201ENST00000577677 100 ntBASIC-0.58□□□□□ -2.5
TPM1P09493 AC008507.4-201ENST00000585464 127 ntBASIC-0.58□□□□□ -2.5
TPM1P09493 AC005014.2-201ENST00000607795 599 ntBASIC-0.58□□□□□ -2.5
TPM1P09493 AC006441.5-201ENST00000612680 209 ntBASIC-0.58□□□□□ -2.5
TPM1P09493 PVT1_3.1-201ENST00000620853 95 ntBASIC-0.58□□□□□ -2.5
TPM1P09493 RNU6-1301P-201ENST00000362724 104 ntBASIC-0.59□□□□□ -2.5
TPM1P09493 Y_RNA.101-201ENST00000363154 102 ntBASIC-0.59□□□□□ -2.5
TPM1P09493 RNU6-269P-201ENST00000391077 97 ntBASIC-0.59□□□□□ -2.5
TPM1P09493 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC-0.59□□□□□ -2.5
TPM1P09493 AC107297.1-201ENST00000459991 176 ntBASIC-0.59□□□□□ -2.5
TPM1P09493 RNU7-116P-201ENST00000516940 62 ntBASIC-0.59□□□□□ -2.5
TPM1P09493 AL512360.1-201ENST00000555346 234 ntBASIC-0.59□□□□□ -2.5
TPM1P09493 MIR4305-201ENST00000583252 102 ntBASIC-0.59□□□□□ -2.5
TPM1P09493 AC005176.2-201ENST00000596933 147 ntBASIC-0.59□□□□□ -2.5
TPM1P09493 RNU6-961P-201ENST00000363893 105 ntBASIC-0.6□□□□□ -2.51
TPM1P09493 SNORA2A-201ENST00000383885 135 ntBASIC-0.6□□□□□ -2.51
TPM1P09493 MIR3942-201ENST00000585264 109 ntBASIC-0.6□□□□□ -2.51
TPM1P09493 AC011712.1-201ENST00000588959 234 ntBASIC-0.6□□□□□ -2.51
TPM1P09493 AL162413.1-201ENST00000603198 110 ntBASIC-0.6□□□□□ -2.51
TPM1P09493 Y_RNA.238-201ENST00000364441 102 ntBASIC-0.61□□□□□ -2.51
TPM1P09493 RNU6-1126P-201ENST00000384002 107 ntBASIC-0.61□□□□□ -2.51
TPM1P09493 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC-0.61□□□□□ -2.51
TPM1P09493 MTCO3P40-201ENST00000392516 676 ntBASIC-0.61□□□□□ -2.51
TPM1P09493 MCFD2P1-201ENST00000417812 300 ntBASIC-0.61□□□□□ -2.51
TPM1P09493 AL590730.1-201ENST00000426283 398 ntTSL 3 BASIC-0.61□□□□□ -2.51
TPM1P09493 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC-0.61□□□□□ -2.51
TPM1P09493 AL158210.1-201ENST00000448835 500 ntTSL 3 BASIC-0.61□□□□□ -2.51
TPM1P09493 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-0.61□□□□□ -2.51
TPM1P09493 snoU13.2-201ENST00000459201 104 ntBASIC-0.61□□□□□ -2.51
TPM1P09493 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC-0.61□□□□□ -2.51
TPM1P09493 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC-0.61□□□□□ -2.51
TPM1P09493 AL359880.1-201ENST00000621879 266 ntBASIC-0.61□□□□□ -2.51
TPM1P09493 uc_338.22-201ENST00000622722 187 ntBASIC-0.61□□□□□ -2.51
TPM1P09493 MIR499B-201ENST00000636498 73 ntBASIC-0.61□□□□□ -2.51
TPM1P09493 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC-0.62□□□□□ -2.51
TPM1P09493 RNU6-1209P-201ENST00000363655 107 ntBASIC-0.62□□□□□ -2.51
TPM1P09493 Y_RNA.796-201ENST00000364268 102 ntBASIC-0.62□□□□□ -2.51
TPM1P09493 Y_RNA.799-201ENST00000364992 102 ntBASIC-0.62□□□□□ -2.51
TPM1P09493 MT-TF-201ENST00000387314 71 ntBASIC-0.62□□□□□ -2.51
TPM1P09493 MIR1197-201ENST00000408818 88 ntBASIC-0.62□□□□□ -2.51
TPM1P09493 SUMO1P3-201ENST00000439961 304 ntBASIC-0.62□□□□□ -2.51
TPM1P09493 SNORD4A-201ENST00000459174 72 ntBASIC-0.62□□□□□ -2.51
TPM1P09493 RNU6-436P-201ENST00000516171 114 ntBASIC-0.62□□□□□ -2.51
TPM1P09493 RNU6-1281P-201ENST00000516223 105 ntBASIC-0.62□□□□□ -2.51
TPM1P09493 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC-0.62□□□□□ -2.51
TPM1P09493 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC-0.62□□□□□ -2.51
TPM1P09493 MIR5188-201ENST00000583467 113 ntBASIC-0.62□□□□□ -2.51
TPM1P09493 POLR3GP1-201ENST00000594073 261 ntBASIC-0.62□□□□□ -2.51
TPM1P09493 AC091304.10-201ENST00000641554 121 ntBASIC-0.62□□□□□ -2.51
TPM1P09493 Y_RNA.242-201ENST00000364473 110 ntBASIC-0.63□□□□□ -2.51
TPM1P09493 RNU6-908P-201ENST00000410160 94 ntBASIC-0.63□□□□□ -2.51
TPM1P09493 POLR2KP2-201ENST00000438155 177 ntBASIC-0.63□□□□□ -2.51
TPM1P09493 RNU7-165P-201ENST00000458864 60 ntBASIC-0.63□□□□□ -2.51
TPM1P09493 RNU7-67P-201ENST00000459003 62 ntBASIC-0.63□□□□□ -2.51
TPM1P09493 RNU6-415P-201ENST00000516252 97 ntBASIC-0.63□□□□□ -2.51
TPM1P09493 NBR2-204ENST00000587322 63 ntBASIC-0.63□□□□□ -2.51
TPM1P09493 Z97988.1-201ENST00000637697 135 ntBASIC-0.63□□□□□ -2.51
TPM1P09493 MIR563-201ENST00000385080 79 ntBASIC-0.64□□□□□ -2.51
TPM1P09493 SNORA26-201ENST00000391286 122 ntBASIC-0.64□□□□□ -2.51
TPM1P09493 RPL39P34-201ENST00000477141 156 ntBASIC-0.64□□□□□ -2.51
TPM1P09493 RNU6-135P-201ENST00000516769 101 ntBASIC-0.64□□□□□ -2.51
TPM1P09493 MIR2355-201ENST00000517199 87 ntBASIC-0.64□□□□□ -2.51
TPM1P09493 AC060780.3-201ENST00000589464 80 ntBASIC-0.64□□□□□ -2.51
TPM1P09493 MIR6128-201ENST00000615528 109 ntBASIC-0.64□□□□□ -2.51
TPM1P09493 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.65□□□□□ -2.51
TPM1P09493 SNORA18.1-201ENST00000363418 128 ntBASIC-0.65□□□□□ -2.51
TPM1P09493 RNU6-601P-201ENST00000384540 107 ntBASIC-0.65□□□□□ -2.51
TPM1P09493 RNU6-332P-201ENST00000391193 108 ntBASIC-0.65□□□□□ -2.51
TPM1P09493 RNU6-1199P-201ENST00000411249 104 ntBASIC-0.65□□□□□ -2.51
TPM1P09493 RNA5SP47-201ENST00000517230 109 ntBASIC-0.65□□□□□ -2.51
TPM1P09493 MIR8055-201ENST00000610739 97 ntBASIC-0.65□□□□□ -2.51
TPM1P09493 AC124864.2-201ENST00000624736 186 ntBASIC-0.65□□□□□ -2.51
TPM1P09493 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.66□□□□□ -2.52
TPM1P09493 RNU6-716P-201ENST00000365621 103 ntBASIC-0.66□□□□□ -2.52
TPM1P09493 Y_RNA.551-201ENST00000384661 102 ntBASIC-0.66□□□□□ -2.52
TPM1P09493 SNORD72-201ENST00000390994 80 ntBASIC-0.66□□□□□ -2.52
TPM1P09493 SNORA75.4-201ENST00000391278 119 ntBASIC-0.66□□□□□ -2.52
TPM1P09493 AL603910.2-201ENST00000407268 136 ntBASIC-0.66□□□□□ -2.52
TPM1P09493 RNU6-710P-201ENST00000410424 105 ntBASIC-0.66□□□□□ -2.52
TPM1P09493 MTND2P22-201ENST00000444325 1033 ntBASIC-0.66□□□□□ -2.52
Retrieved 100 of 98,524 protein–RNA pairs in 102 ms