Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC011604.1-201ENST00000545978 196 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 AC127455.1-201ENST00000565496 145 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 MIR4421-201ENST00000578133 69 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 AC005357.1-201ENST00000588399 301 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 POLR3GP1-201ENST00000594073 261 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 AP003357.1-201ENST00000604497 148 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 AC242852.1-201ENST00000612151 96 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 MIR8054-201ENST00000620877 86 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 AC244015.1-201ENST00000622301 99 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
HOXD4P09016 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
HOXD4P09016 Y_RNA.20-201ENST00000362479 113 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 Y_RNA.82-201ENST00000363000 102 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 Y_RNA.92-201ENST00000363043 102 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 RNU6-899P-201ENST00000363947 107 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 Y_RNA.235-201ENST00000364412 102 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 Y_RNA.306-201ENST00000365015 102 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 Y_RNA.312-201ENST00000365089 102 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 Y_RNA.322-201ENST00000365151 102 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 SNORA72-201ENST00000384339 132 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 MIR320A-201ENST00000385302 82 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 SNORA12.1-201ENST00000390873 148 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 RNU6-440P-201ENST00000390882 105 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 Y_RNA.618-201ENST00000410949 107 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 SNORD2.1-201ENST00000458762 69 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 Y_RNA.650-201ENST00000459002 102 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 snoU13.18-201ENST00000459483 104 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 RPL23AP54-201ENST00000495129 419 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 RNU6-1023P-201ENST00000516137 106 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 RNU7-116P-201ENST00000516940 62 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 Y_RNA.777-201ENST00000516982 102 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 RNU1-92P-201ENST00000517017 135 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 Y_RNA.771-201ENST00000598668 102 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 AC013791.1-201ENST00000616619 62 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 Y_RNA.789-201ENST00000622480 102 ntBASIC1.35□□□□□ -2.19
HOXD4P09016 AL161722.3-201ENST00000605789 2983 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 Y_RNA.76-201ENST00000362931 109 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 Y_RNA.188-201ENST00000363952 111 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 Y_RNA.224-201ENST00000364308 111 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 MIR562-201ENST00000384894 95 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 Y_RNA.590-201ENST00000410140 107 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 Y_RNA.621-201ENST00000411065 96 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 FTH1P12-201ENST00000432137 551 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 SNORD116-28-201ENST00000516123 91 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 RNU2-56P-201ENST00000516826 190 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 RNU6-1271P-201ENST00000517049 105 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 AP002004.2-201ENST00000531656 154 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.34□□□□□ -2.19
HOXD4P09016 AL160236.1-201ENST00000556317 195 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 MIR5692C2-201ENST00000577959 77 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 MIR4282-201ENST00000583613 67 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 AL929325.1-201ENST00000603096 117 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 BX284668.6-201ENST00000606899 438 ntBASIC1.34□□□□□ -2.19
HOXD4P09016 Y_RNA.65-201ENST00000362846 100 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 RNU6-1205P-201ENST00000363625 106 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 RNU6-414P-201ENST00000363705 104 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 SNORA20.1-201ENST00000364790 130 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 RNU6-439P-201ENST00000384188 106 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 Y_RNA.478-201ENST00000384358 107 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 MIR150-201ENST00000385048 84 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 MT-TG-201ENST00000387429 68 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 SNORA36B-201ENST00000410438 131 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 RNU6-955P-201ENST00000410497 104 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC1.33□□□□□ -2.2
HOXD4P09016 STAG3L5P-204ENST00000443759 179 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.33□□□□□ -2.2
HOXD4P09016 snoU13.27-201ENST00000459278 104 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 AC023790.1-201ENST00000482174 347 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 Y_RNA.679-201ENST00000516416 91 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 RNA5SP481-201ENST00000516814 122 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 RNU6-111P-201ENST00000517179 105 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 AL358944.1-201ENST00000528537 144 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 AC006006.1-201ENST00000603082 144 ntBASIC1.33□□□□□ -2.2
HOXD4P09016 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.33□□□□□ -2.2
HOXD4P09016 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
HOXD4P09016 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.32□□□□□ -2.2
HOXD4P09016 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
HOXD4P09016 MIR126-201ENST00000362291 85 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 U8.1-201ENST00000362843 134 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 MIR489-201ENST00000384923 84 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 RNU6-360P-201ENST00000390944 104 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 SNORD58.1-201ENST00000391313 66 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 MIR1304-201ENST00000408243 91 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.32□□□□□ -2.2
HOXD4P09016 snoU13.9-201ENST00000458927 103 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 RNU7-34P-201ENST00000459394 64 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 AC099513.1-201ENST00000490423 301 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 HMGN1P7-201ENST00000491722 313 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.32□□□□□ -2.2
HOXD4P09016 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC1.32□□□□□ -2.2
HOXD4P09016 MIR4709-201ENST00000577272 72 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 MIR4422-201ENST00000581938 83 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 AC011921.3-201ENST00000605540 361 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 AL157834.3-201ENST00000615543 103 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 AC073349.3-201ENST00000617616 186 ntBASIC1.32□□□□□ -2.2
HOXD4P09016 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.31□□□□□ -2.2
HOXD4P09016 RNU6-379P-201ENST00000363813 104 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 RNU4-10P-201ENST00000364383 140 ntBASIC1.31□□□□□ -2.2
HOXD4P09016 RNU4-41P-201ENST00000364426 143 ntBASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 170.5 ms