Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 AC022137.1-201ENST00000483735 151 ntBASIC-1.31□□□□□ -2.62
CPSF4LA6NMK7 SNORD22.1-201ENST00000516331 125 ntBASIC-1.31□□□□□ -2.62
CPSF4LA6NMK7 SCARNA24.1-201ENST00000516465 137 ntBASIC-1.31□□□□□ -2.62
CPSF4LA6NMK7 RNA5SP33-201ENST00000516687 98 ntBASIC-1.31□□□□□ -2.62
CPSF4LA6NMK7 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC-1.31□□□□□ -2.62
CPSF4LA6NMK7 AL356055.1-201ENST00000602528 446 ntBASIC-1.31□□□□□ -2.62
CPSF4LA6NMK7 MIR382-201ENST00000637119 76 ntBASIC-1.31□□□□□ -2.62
CPSF4LA6NMK7 MIR6086-201ENST00000638065 55 ntBASIC-1.31□□□□□ -2.62
CPSF4LA6NMK7 AC099654.12-201ENST00000639868 649 ntBASIC-1.31□□□□□ -2.62
CPSF4LA6NMK7 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 RNU6-1309P-201ENST00000363305 108 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 RNU6-509P-201ENST00000363519 107 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 Y_RNA.151-201ENST00000363566 112 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 SNORD115-32-201ENST00000364079 82 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 Y_RNA.361-201ENST00000365515 120 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 RNU6-1264P-201ENST00000383891 107 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 SNORA20.2-201ENST00000383922 131 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 MIR147A-201ENST00000385079 72 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 SNORD115.1-201ENST00000391109 76 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 RPL30P16-201ENST00000419341 429 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 ELOCP4-201ENST00000420090 333 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 SNORA25.16-201ENST00000516741 121 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 RNU6-1198P-201ENST00000516904 67 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 AC022616.4-201ENST00000522985 181 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 MTND4LP18-201ENST00000526864 291 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 UBL5P4-201ENST00000562584 236 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 AC008507.2-201ENST00000588402 1176 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 AL662814.1-201ENST00000617364 121 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 AC072046.2-201ENST00000618366 268 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 AC007671.2-201ENST00000637344 619 ntBASIC-1.32□□□□□ -2.62
CPSF4LA6NMK7 RNU6-1317P-201ENST00000364582 104 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 Y_RNA.283-201ENST00000364798 112 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 RNY3P5-201ENST00000384127 102 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 RNU6-1106P-201ENST00000390845 107 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 RNU6-159P-201ENST00000391080 106 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 MTND2P18-201ENST00000419962 1030 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 RPL22P17-201ENST00000438729 315 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 RPL39P25-201ENST00000449384 154 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 Y_RNA.714-201ENST00000517065 90 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 AP003181.2-201ENST00000528941 181 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 OSBPL9P5-201ENST00000542581 171 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 MIR4473-201ENST00000583731 91 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 AP001282.2-201ENST00000616149 309 ntBASIC-1.33□□□□□ -2.62
CPSF4LA6NMK7 RNA5SP192-201ENST00000364404 120 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 SNORD114-29-201ENST00000364819 70 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 RNU6-702P-201ENST00000364982 107 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 Y_RNA.367-201ENST00000365544 101 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 Y_RNA.450-201ENST00000384198 113 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 RNU6-809P-201ENST00000384461 107 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 Z82188.1-201ENST00000436709 154 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 NDUFAF4P4-201ENST00000454883 502 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 RNU7-67P-201ENST00000459003 62 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 RNU7-55P-201ENST00000459426 62 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 RNU6-966P-201ENST00000516479 104 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 RNU6-1337P-201ENST00000516525 95 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 SCOCP1-201ENST00000554676 349 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 MIR3115-201ENST00000577915 68 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 AC109347.2-201ENST00000610220 349 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 AC009248.2-201ENST00000619826 254 ntBASIC-1.34□□□□□ -2.62
CPSF4LA6NMK7 SNORD24-201ENST00000383884 75 ntBASIC-1.35□□□□□ -2.63
CPSF4LA6NMK7 Y_RNA.399-201ENST00000383955 105 ntBASIC-1.35□□□□□ -2.63
CPSF4LA6NMK7 RNU6-1036P-201ENST00000383959 104 ntBASIC-1.35□□□□□ -2.63
CPSF4LA6NMK7 MIR587-201ENST00000384845 96 ntBASIC-1.35□□□□□ -2.63
CPSF4LA6NMK7 RNU6-1250P-201ENST00000391218 107 ntBASIC-1.35□□□□□ -2.63
CPSF4LA6NMK7 AP000533.3-201ENST00000447704 118 ntBASIC-1.35□□□□□ -2.63
CPSF4LA6NMK7 snoU13.13-201ENST00000458842 104 ntBASIC-1.35□□□□□ -2.63
CPSF4LA6NMK7 RNU6-1194P-201ENST00000516208 104 ntBASIC-1.35□□□□□ -2.63
CPSF4LA6NMK7 RNU6-958P-201ENST00000516995 106 ntBASIC-1.35□□□□□ -2.63
CPSF4LA6NMK7 RNY1P9-201ENST00000532431 109 ntBASIC-1.35□□□□□ -2.63
CPSF4LA6NMK7 PIGPP4-201ENST00000584447 307 ntBASIC-1.35□□□□□ -2.63
CPSF4LA6NMK7 U6.114-201ENST00000636407 96 ntBASIC-1.35□□□□□ -2.63
CPSF4LA6NMK7 RNU6-280P-201ENST00000364145 104 ntBASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 RNU4-66P-201ENST00000365199 138 ntBASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 Y_RNA.471-201ENST00000384312 102 ntBASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 RNU6-1190P-201ENST00000410811 104 ntBASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 snoU13.19-201ENST00000459148 104 ntBASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 RNU7-138P-201ENST00000459479 64 ntBASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 RNU6-334P-201ENST00000517072 102 ntBASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 MIR4775-201ENST00000581168 75 ntBASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 AC005972.2-201ENST00000604690 348 ntBASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 AP000942.4-201ENST00000604811 241 ntBASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 AC064836.2-201ENST00000609491 462 ntBASIC-1.36□□□□□ -2.63
CPSF4LA6NMK7 SNORD115-34-201ENST00000362441 82 ntBASIC-1.37□□□□□ -2.63
CPSF4LA6NMK7 SNORD115-12-201ENST00000362583 82 ntBASIC-1.37□□□□□ -2.63
CPSF4LA6NMK7 SNORD115-29-201ENST00000362834 82 ntBASIC-1.37□□□□□ -2.63
CPSF4LA6NMK7 SNORD115-9-201ENST00000362912 82 ntBASIC-1.37□□□□□ -2.63
CPSF4LA6NMK7 SNORD115-21-201ENST00000362963 81 ntBASIC-1.37□□□□□ -2.63
CPSF4LA6NMK7 SNORD115-14-201ENST00000363090 81 ntBASIC-1.37□□□□□ -2.63
CPSF4LA6NMK7 SNORD115-13-201ENST00000363358 82 ntBASIC-1.37□□□□□ -2.63
CPSF4LA6NMK7 SNORD115-41-201ENST00000363608 82 ntBASIC-1.37□□□□□ -2.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms