Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 MIR873-201ENST00000401120 77 ntBASIC0.76□□□□□ -2.29
SHANK1Q9Y566 MRPL35P3-201ENST00000421557 364 ntBASIC0.76□□□□□ -2.29
SHANK1Q9Y566 AC092423.1-201ENST00000430165 186 ntBASIC0.76□□□□□ -2.29
SHANK1Q9Y566 RNU6-966P-201ENST00000516479 104 ntBASIC0.76□□□□□ -2.29
SHANK1Q9Y566 RNU11-2P-201ENST00000516898 142 ntBASIC0.76□□□□□ -2.29
SHANK1Q9Y566 AC044792.1-201ENST00000593294 196 ntBASIC0.76□□□□□ -2.29
SHANK1Q9Y566 AL080274.1-201ENST00000605565 220 ntBASIC0.76□□□□□ -2.29
SHANK1Q9Y566 AC037487.3-201ENST00000606668 112 ntBASIC0.76□□□□□ -2.29
SHANK1Q9Y566 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
SHANK1Q9Y566 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.75□□□□□ -2.29
SHANK1Q9Y566 RNU6-626P-201ENST00000363354 107 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.310-201ENST00000365063 113 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 RNU6-1264P-201ENST00000383891 107 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.412-201ENST00000384001 104 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 RNU6-710P-201ENST00000410424 105 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 RNU6-1199P-201ENST00000411249 104 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 RNU7-141P-201ENST00000459304 62 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.75□□□□□ -2.29
SHANK1Q9Y566 RNA5SP20-201ENST00000515976 84 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 RNU6-351P-201ENST00000516097 100 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 SNORD116.3-201ENST00000517176 78 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 AP002001.1-203ENST00000534002 267 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 AC090049.2-201ENST00000550377 109 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 AC005176.2-201ENST00000596933 147 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 AL357312.1-201ENST00000603879 298 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 AP003357.1-201ENST00000604497 148 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 AL021879.1-201ENST00000611756 288 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.75□□□□□ -2.29
SHANK1Q9Y566 MIR8065-201ENST00000620577 100 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 MIR1302-1-201ENST00000637932 143 ntBASIC0.75□□□□□ -2.29
SHANK1Q9Y566 RNA5SP259-201ENST00000365541 109 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.395-201ENST00000383945 109 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 RNU6-20P-201ENST00000384106 107 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.462-201ENST00000384268 102 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 SNORD38C-201ENST00000384381 69 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 MIR452-201ENST00000385020 85 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 AC073910.1-201ENST00000445047 438 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 RNU6-437P-201ENST00000459408 95 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 RNA5SP168-201ENST00000516642 112 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
SHANK1Q9Y566 AC015688.6-201ENST00000577737 104 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 MIR3171-201ENST00000584270 74 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 MIR8087-201ENST00000612745 78 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 MIR6835-201ENST00000621552 64 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.11-201ENST00000362375 109 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 RNU4-90P-201ENST00000362773 141 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.101-201ENST00000363154 102 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 RNU6-1175P-201ENST00000365200 107 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 SNORD116-13-201ENST00000384408 92 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 MIR1185-1-201ENST00000408598 86 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 AC096644.2-201ENST00000429278 159 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.74□□□□□ -2.29
SHANK1Q9Y566 AC005002.2-201ENST00000438228 269 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 LINC01399-202ENST00000458450 244 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 RNU7-169P-201ENST00000459456 61 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 AC114811.1-201ENST00000507207 168 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 SNORA31.4-201ENST00000516049 129 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.714-201ENST00000517065 90 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.74□□□□□ -2.29
SHANK1Q9Y566 AC011476.5-201ENST00000615594 130 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 AL591926.4-201ENST00000616895 298 ntBASIC0.74□□□□□ -2.29
SHANK1Q9Y566 RNU6-1115P-201ENST00000362490 106 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.28-201ENST00000362554 111 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.222-201ENST00000364264 102 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.230-201ENST00000364348 109 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.439-201ENST00000384119 94 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.526-201ENST00000384572 110 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 AL034345.1-201ENST00000407768 123 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 MIR1302-11-201ENST00000408051 138 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 MIR1302-9-201ENST00000408365 138 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 MIR1302-10-201ENST00000408734 138 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 RNA5SP511-201ENST00000410487 115 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 RPL21P38-201ENST00000418090 167 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 Z98949.2-201ENST00000440996 144 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 MRPS10P1-201ENST00000448483 130 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 RPL39P38-201ENST00000467018 153 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 RNU6-902P-201ENST00000517212 91 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 AC092447.9-201ENST00000603395 144 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 MIR1302-2-201ENST00000607096 138 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 SNORD113-5-201ENST00000607261 78 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 RNU6-1084P-201ENST00000362498 107 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 RNU6-199P-201ENST00000362954 107 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 RNU6-833P-201ENST00000363486 107 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.424-201ENST00000384063 103 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 RNU6-440P-201ENST00000390882 105 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.579-201ENST00000390939 94 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 SNORD115-46-201ENST00000390982 71 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.581-201ENST00000391017 97 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 AL451046.2-201ENST00000403074 277 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC0.73□□□□□ -2.29
SHANK1Q9Y566 SNX2P2-201ENST00000424553 323 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 AC027119.1-201ENST00000440877 241 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 AC105758.1-201ENST00000506038 399 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 Y_RNA.721-201ENST00000517207 102 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 CYP3A52P-201ENST00000563326 91 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 AC011373.1-201ENST00000607270 237 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 JPX_2.1-201ENST00000614161 69 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 Pinc.1-201ENST00000616452 154 ntBASIC0.73□□□□□ -2.29
SHANK1Q9Y566 SNORD3E-202ENST00000627253 216 ntBASIC0.73□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 172.5 ms