Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 AC023141.4-201ENST00000412031 328 ntBASIC3.57□□□□□ -1.84
COL17A1Q9UMD9 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.57□□□□□ -1.84
COL17A1Q9UMD9 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC3.57□□□□□ -1.84
COL17A1Q9UMD9 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL17A1Q9UMD9 AC010099.1-201ENST00000455434 375 ntBASIC3.57□□□□□ -1.84
COL17A1Q9UMD9 COX6CP6-201ENST00000490840 228 ntBASIC3.57□□□□□ -1.84
COL17A1Q9UMD9 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC3.57□□□□□ -1.84
COL17A1Q9UMD9 MIR6733-201ENST00000635723 61 ntBASIC3.57□□□□□ -1.84
COL17A1Q9UMD9 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
COL17A1Q9UMD9 STAU2-207ENST00000519961 3928 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
COL17A1Q9UMD9 MBNL1-224ENST00000545754 5147 ntTSL 5 BASIC3.57□□□□□ -1.84
COL17A1Q9UMD9 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.56□□□□□ -1.84
COL17A1Q9UMD9 MIR518E-201ENST00000385252 88 ntBASIC3.56□□□□□ -1.84
COL17A1Q9UMD9 RNU6-750P-201ENST00000390946 107 ntBASIC3.56□□□□□ -1.84
COL17A1Q9UMD9 AC025281.1-201ENST00000567026 265 ntBASIC3.56□□□□□ -1.84
COL17A1Q9UMD9 U2.20-201ENST00000613956 192 ntBASIC3.56□□□□□ -1.84
COL17A1Q9UMD9 MIR548AY-201ENST00000617669 107 ntBASIC3.56□□□□□ -1.84
COL17A1Q9UMD9 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC3.56□□□□□ -1.84
COL17A1Q9UMD9 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
COL17A1Q9UMD9 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC3.56□□□□□ -1.84
COL17A1Q9UMD9 NEB-218ENST00000603639 25578 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 NEB-219ENST00000604864 25578 ntAPPRIS ALT2 TSL 5 BASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 RNU6-655P-201ENST00000362858 107 ntBASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 RNU6-1210P-201ENST00000363775 107 ntBASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 MIR891A-201ENST00000401237 79 ntBASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 AC027124.2-201ENST00000428249 105 ntBASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 SNORA70.12-201ENST00000516084 153 ntBASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 RNU6-1299P-201ENST00000516316 100 ntBASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 RNU7-115P-201ENST00000516433 55 ntBASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 SNORA18.4-201ENST00000516440 124 ntBASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 MIR5588-201ENST00000581890 63 ntBASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 MIR5006-201ENST00000583027 110 ntBASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 RPL17P51-201ENST00000605218 238 ntBASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 U6.115-201ENST00000636045 103 ntBASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
COL17A1Q9UMD9 RNU6-529P-201ENST00000363383 104 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 RNU6-1240P-201ENST00000365155 104 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 RNA5SP201-201ENST00000410316 124 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 MIR5007-201ENST00000583098 95 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 U4atac.1-201ENST00000618345 95 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 AC068205.3-201ENST00000636385 468 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 Y_RNA.91-201ENST00000363042 107 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 SNORD87-201ENST00000364849 89 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 RNA5SP210-201ENST00000391034 120 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 AF228730.3-201ENST00000436691 102 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 MTATP6P21-201ENST00000440681 189 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 AL160236.1-201ENST00000556317 195 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 AL049861.1-201ENST00000603130 150 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 uc_338.14-201ENST00000613162 166 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 SNORA50A-202ENST00000629536 136 ntBASIC3.54□□□□□ -1.84
COL17A1Q9UMD9 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 RNU1-57P-201ENST00000384491 166 ntBASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 TOMM22P2-201ENST00000430735 237 ntBASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 RNA5SP57-201ENST00000459463 123 ntBASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 AL078612.1-201ENST00000533009 150 ntTSL 5 BASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 AL137067.1-201ENST00000615933 120 ntBASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 5S_rRNA.13-201ENST00000622298 123 ntBASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 GABRG2-208ENST00000638552 3710 ntTSL 5 BASIC3.53□□□□□ -1.84
COL17A1Q9UMD9 AC010680.1-201ENST00000590024 3590 ntBASIC3.52□□□□□ -1.85
COL17A1Q9UMD9 SNORA4.2-201ENST00000365313 147 ntBASIC3.52□□□□□ -1.85
COL17A1Q9UMD9 Y_RNA.366-201ENST00000365540 102 ntBASIC3.52□□□□□ -1.85
COL17A1Q9UMD9 RNU2-70P-201ENST00000410718 179 ntBASIC3.52□□□□□ -1.85
COL17A1Q9UMD9 RNU7-171P-201ENST00000459581 62 ntBASIC3.52□□□□□ -1.85
COL17A1Q9UMD9 RPL36AP48-201ENST00000485521 314 ntBASIC3.52□□□□□ -1.85
COL17A1Q9UMD9 AC145146.1-201ENST00000496370 254 ntBASIC3.52□□□□□ -1.85
COL17A1Q9UMD9 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC3.52□□□□□ -1.85
COL17A1Q9UMD9 RNU6-162P-201ENST00000516228 103 ntBASIC3.52□□□□□ -1.85
COL17A1Q9UMD9 AC084364.2-201ENST00000546924 395 ntBASIC3.52□□□□□ -1.85
COL17A1Q9UMD9 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL17A1Q9UMD9 RNU1-105P-201ENST00000363470 161 ntBASIC3.51□□□□□ -1.85
COL17A1Q9UMD9 RNY4P6-201ENST00000363667 96 ntBASIC3.51□□□□□ -1.85
COL17A1Q9UMD9 Y_RNA.265-201ENST00000364677 108 ntBASIC3.51□□□□□ -1.85
COL17A1Q9UMD9 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COL17A1Q9UMD9 RNA5SP38-201ENST00000410750 119 ntBASIC3.51□□□□□ -1.85
COL17A1Q9UMD9 RN7SKP101-201ENST00000411376 320 ntBASIC3.51□□□□□ -1.85
COL17A1Q9UMD9 RNU2-44P-201ENST00000516795 194 ntBASIC3.51□□□□□ -1.85
COL17A1Q9UMD9 MIR219B-201ENST00000637023 88 ntBASIC3.51□□□□□ -1.85
COL17A1Q9UMD9 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
COL17A1Q9UMD9 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC3.51□□□□□ -1.85
COL17A1Q9UMD9 AL159152.1-201ENST00000635019 2587 ntBASIC3.51□□□□□ -1.85
COL17A1Q9UMD9 ZBTB6-201ENST00000373659 4106 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
COL17A1Q9UMD9 RNA5SP295-201ENST00000362655 121 ntBASIC3.5□□□□□ -1.85
COL17A1Q9UMD9 RNU6-414P-201ENST00000363705 104 ntBASIC3.5□□□□□ -1.85
COL17A1Q9UMD9 RNU4-41P-201ENST00000364426 143 ntBASIC3.5□□□□□ -1.85
COL17A1Q9UMD9 Y_RNA.634-201ENST00000364811 113 ntBASIC3.5□□□□□ -1.85
COL17A1Q9UMD9 RNU6-675P-201ENST00000384236 104 ntBASIC3.5□□□□□ -1.85
COL17A1Q9UMD9 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
COL17A1Q9UMD9 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.5□□□□□ -1.85
COL17A1Q9UMD9 RNU6-267P-201ENST00000516714 103 ntBASIC3.5□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms