Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 Y_RNA.197-201ENST00000364004 102 ntBASIC0.97□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.310-201ENST00000365063 113 ntBASIC0.97□□□□□ -2.25
VPS54Q9P1Q0 Y_RNA.462-201ENST00000384268 102 ntBASIC0.97□□□□□ -2.25
VPS54Q9P1Q0 MIR452-201ENST00000385020 85 ntBASIC0.97□□□□□ -2.25
VPS54Q9P1Q0 RNU6-710P-201ENST00000410424 105 ntBASIC0.97□□□□□ -2.25
VPS54Q9P1Q0 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.97□□□□□ -2.25
VPS54Q9P1Q0 AC010655.3-201ENST00000478818 450 ntBASIC0.97□□□□□ -2.25
VPS54Q9P1Q0 RPS26P48-201ENST00000491713 339 ntBASIC0.97□□□□□ -2.25
VPS54Q9P1Q0 MIR3145-201ENST00000580727 82 ntBASIC0.97□□□□□ -2.25
VPS54Q9P1Q0 MIR6504-201ENST00000613520 61 ntBASIC0.97□□□□□ -2.25
VPS54Q9P1Q0 AC007485.1-201ENST00000616755 206 ntBASIC0.97□□□□□ -2.25
VPS54Q9P1Q0 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.97□□□□□ -2.25
VPS54Q9P1Q0 SNORD50B-201ENST00000364995 70 ntBASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.439-201ENST00000384119 94 ntBASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 MIR19B1-201ENST00000384829 87 ntBASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 RNU6ATAC27P-201ENST00000408289 119 ntBASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 AC063976.4-201ENST00000421971 163 ntBASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 SNRPGP10-201ENST00000432323 225 ntBASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 SNORD111.1-201ENST00000516421 86 ntBASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 POLR3GP1-201ENST00000594073 261 ntBASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 AC136443.5-201ENST00000603741 370 ntBASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 PRELID3BP2-201ENST00000605362 201 ntBASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 MIR6857-201ENST00000613267 93 ntBASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 AL138825.1-201ENST00000618587 192 ntBASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.96□□□□□ -2.26
VPS54Q9P1Q0 U8.7-201ENST00000364940 136 ntBASIC0.95□□□□□ -2.26
VPS54Q9P1Q0 SNORD114-22-201ENST00000365423 72 ntBASIC0.95□□□□□ -2.26
VPS54Q9P1Q0 RNU6-1323P-201ENST00000384025 107 ntBASIC0.95□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.551-201ENST00000384661 102 ntBASIC0.95□□□□□ -2.26
VPS54Q9P1Q0 SNORD12-201ENST00000391002 90 ntBASIC0.95□□□□□ -2.26
VPS54Q9P1Q0 U8.20-201ENST00000459445 131 ntBASIC0.95□□□□□ -2.26
VPS54Q9P1Q0 SNORD124-201ENST00000459577 104 ntBASIC0.95□□□□□ -2.26
VPS54Q9P1Q0 AC117454.1-201ENST00000491120 168 ntBASIC0.95□□□□□ -2.26
VPS54Q9P1Q0 AC090142.3-201ENST00000519012 385 ntBASIC0.95□□□□□ -2.26
VPS54Q9P1Q0 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.95□□□□□ -2.26
VPS54Q9P1Q0 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.95□□□□□ -2.26
VPS54Q9P1Q0 AC008163.1-202ENST00000636004 2889 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 SNORD114-2-201ENST00000363953 78 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.813-201ENST00000364639 102 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.368-201ENST00000365547 113 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.419-201ENST00000384041 102 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.456-201ENST00000384232 111 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 SNORD63-201ENST00000384262 68 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.471-201ENST00000384312 102 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 SNORA80D-201ENST00000384488 135 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 RNU6-131P-201ENST00000391144 107 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 RNU6-130P-201ENST00000411112 103 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 AC040926.1-201ENST00000530195 238 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 AC024405.2-202ENST00000532731 184 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 AL080274.1-201ENST00000605565 220 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 AL133255.1-201ENST00000606374 441 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 PART1_1.1-201ENST00000611761 217 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 uc_338.22-201ENST00000622722 187 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 AL391516.1-201ENST00000554380 2449 ntBASIC0.94□□□□□ -2.26
VPS54Q9P1Q0 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.191-201ENST00000363972 113 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 RNU6-1187P-201ENST00000364771 110 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 snoU2-30.1-201ENST00000365012 70 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 SNORD14.1-201ENST00000365609 90 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 AC117470.1-201ENST00000381974 330 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 MIR520E-201ENST00000384867 87 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 MIR499A-201ENST00000384903 122 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 MIR136-201ENST00000385207 82 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 AC024067.1-201ENST00000426199 223 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 SNORA18.7-201ENST00000516910 131 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 AC211469.2-201ENST00000605461 205 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 AL391903.3-201ENST00000612158 163 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.93□□□□□ -2.26
VPS54Q9P1Q0 MIR369-201ENST00000362155 70 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.238-201ENST00000364441 102 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.286-201ENST00000364813 102 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 RNU6-969P-201ENST00000383900 105 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 RNU6-21P-201ENST00000384710 107 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 MIR520C-201ENST00000385005 87 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 MT-TD-201ENST00000387419 68 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 RNU6-308P-201ENST00000390957 107 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 SNORA75.2-201ENST00000391138 150 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 SNORA75.3-201ENST00000391231 150 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 AC245047.8-201ENST00000456455 284 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 HMGN1P10-201ENST00000474557 553 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 RPL23AP54-201ENST00000495129 419 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 AL117351.2-201ENST00000513571 157 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 RNU6-351P-201ENST00000516097 100 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 RNU7-116P-201ENST00000516940 62 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 SNORA74.3-201ENST00000517108 154 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 MIR4661-201ENST00000582720 75 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 AP003357.1-201ENST00000604497 148 ntBASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.92□□□□□ -2.26
VPS54Q9P1Q0 SNORA25.3-201ENST00000363205 127 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.112-201ENST00000363250 102 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 RNU6-1048P-201ENST00000364054 107 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.203-201ENST00000364106 102 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 RNU4-50P-201ENST00000364361 141 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.383-201ENST00000383855 97 ntBASIC0.91□□□□□ -2.26
VPS54Q9P1Q0 Y_RNA.526-201ENST00000384572 110 ntBASIC0.91□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms