Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 MIR4762-201ENST00000585261 75 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 AC022513.1-201ENST00000624512 117 ntBASIC2.13□□□□□ -2.07
VSX1Q9NZR4 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
VSX1Q9NZR4 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.12□□□□□ -2.07
VSX1Q9NZR4 MIR126-201ENST00000362291 85 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 SNORA1B-201ENST00000362535 133 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 RNU6-774P-201ENST00000363238 107 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 SNORA33-201ENST00000363664 130 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 RNA5SP68-201ENST00000363885 119 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 Y_RNA.215-201ENST00000364204 112 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 SNORD114-30-201ENST00000364448 72 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 U8.5-201ENST00000364528 136 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 RNU6-484P-201ENST00000384016 107 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 RNU6-131P-201ENST00000391144 107 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 SNORD23.1-201ENST00000408212 104 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 Y_RNA.622-201ENST00000411091 108 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 RPL30P13-201ENST00000418873 348 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 AC245047.3-201ENST00000429428 127 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 AC245047.4-201ENST00000433189 144 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 RNU7-149P-201ENST00000516739 59 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 RNU6-365P-201ENST00000517113 106 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC2.12□□□□□ -2.07
VSX1Q9NZR4 MIR4529-201ENST00000578110 78 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 MIR3910-1-201ENST00000580936 111 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC2.12□□□□□ -2.07
VSX1Q9NZR4 AC103810.6-201ENST00000606708 136 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 MIR6817-201ENST00000615588 66 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 Pinc.1-201ENST00000616452 154 ntBASIC2.12□□□□□ -2.07
VSX1Q9NZR4 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.12□□□□□ -2.07
VSX1Q9NZR4 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.12□□□□□ -2.07
VSX1Q9NZR4 AC005336.3-201ENST00000623833 2679 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 RNU6-199P-201ENST00000362954 107 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 RNU6-151P-201ENST00000364158 107 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 SNORA25.7-201ENST00000364375 127 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 RNU6-1130P-201ENST00000365434 107 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 RNU4-52P-201ENST00000384209 138 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 MIR513C-201ENST00000401352 84 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 RN7SKP200-201ENST00000410564 320 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 AL356379.1-201ENST00000414105 126 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
VSX1Q9NZR4 HMGN2P38-201ENST00000423806 265 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 HMGN2P3-201ENST00000433603 273 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 HMGN2P5-201ENST00000436882 273 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 AL513328.1-201ENST00000446460 224 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.11□□□□□ -2.07
VSX1Q9NZR4 AC079804.2-201ENST00000490376 200 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 AC026436.1-201ENST00000510537 270 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 RNU6-561P-201ENST00000516222 102 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 RNU6-504P-201ENST00000516568 104 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 AC091544.4-201ENST00000555268 342 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 AC022217.4-201ENST00000604389 163 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 MIR6844-201ENST00000637122 62 ntBASIC2.11□□□□□ -2.07
VSX1Q9NZR4 AC131280.1-202ENST00000624067 4211 ntBASIC2.1□□□□□ -2.07
VSX1Q9NZR4 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
VSX1Q9NZR4 SNORA63D-201ENST00000364359 132 ntBASIC2.1□□□□□ -2.07
VSX1Q9NZR4 MIR520A-201ENST00000384862 85 ntBASIC2.1□□□□□ -2.07
VSX1Q9NZR4 MIR522-201ENST00000385071 87 ntBASIC2.1□□□□□ -2.07
VSX1Q9NZR4 SNORA75.5-201ENST00000391291 81 ntBASIC2.1□□□□□ -2.07
VSX1Q9NZR4 RNA5SP481-201ENST00000516814 122 ntBASIC2.1□□□□□ -2.07
VSX1Q9NZR4 SNORA31.25-201ENST00000517242 134 ntBASIC2.1□□□□□ -2.07
VSX1Q9NZR4 MIR5094-201ENST00000578766 85 ntBASIC2.1□□□□□ -2.07
VSX1Q9NZR4 AC132825.6-201ENST00000638861 357 ntBASIC2.1□□□□□ -2.07
VSX1Q9NZR4 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
VSX1Q9NZR4 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.1□□□□□ -2.07
VSX1Q9NZR4 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC2.09□□□□□ -2.07
VSX1Q9NZR4 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.09□□□□□ -2.07
VSX1Q9NZR4 Y_RNA.265-201ENST00000364677 108 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 Y_RNA.634-201ENST00000364811 113 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 RNU6-301P-201ENST00000384277 107 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 Y_RNA.510-201ENST00000384511 114 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 RNU6-440P-201ENST00000390882 105 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 SNORD37.2-201ENST00000391075 66 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 AL034345.1-201ENST00000407768 123 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.09□□□□□ -2.07
VSX1Q9NZR4 TRBV12-1-201ENST00000479785 344 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 AC090255.1-201ENST00000495779 349 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 RNU7-193P-201ENST00000516723 65 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.09□□□□□ -2.07
VSX1Q9NZR4 SUB1P4-201ENST00000566062 339 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 AC008507.4-201ENST00000585464 127 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 AL591926.4-201ENST00000616895 298 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 MIR8054-201ENST00000620877 86 ntBASIC2.09□□□□□ -2.07
VSX1Q9NZR4 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.09□□□□□ -2.08
VSX1Q9NZR4 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC2.08□□□□□ -2.08
VSX1Q9NZR4 ZNF658B-202ENST00000615961 3375 ntBASIC2.08□□□□□ -2.08
VSX1Q9NZR4 Y_RNA.336-201ENST00000365307 109 ntBASIC2.08□□□□□ -2.08
VSX1Q9NZR4 RNU6-187P-201ENST00000384139 106 ntBASIC2.08□□□□□ -2.08
VSX1Q9NZR4 MIR802-201ENST00000390235 94 ntBASIC2.08□□□□□ -2.08
VSX1Q9NZR4 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.08□□□□□ -2.08
VSX1Q9NZR4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC2.08□□□□□ -2.08
VSX1Q9NZR4 HMGN2P32-201ENST00000444648 269 ntBASIC2.08□□□□□ -2.08
VSX1Q9NZR4 NDUFA4P2-201ENST00000489989 244 ntBASIC2.08□□□□□ -2.08
VSX1Q9NZR4 AL359851.1-201ENST00000569460 4997 ntBASIC2.08□□□□□ -2.08
VSX1Q9NZR4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.07□□□□□ -2.08
VSX1Q9NZR4 snoU2-30.1-201ENST00000365012 70 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 SNORD24-201ENST00000383884 75 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 Y_RNA.497-201ENST00000384447 98 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 Y_RNA.568-201ENST00000384742 113 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 MIR597-201ENST00000384968 97 ntBASIC2.07□□□□□ -2.08
VSX1Q9NZR4 MIR17-201ENST00000385012 84 ntBASIC2.07□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 182.3 ms