Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.06□□□□□ -2.08
DDX56Q9NY93 ZNF355P-201ENST00000427301 3216 ntBASIC2.06□□□□□ -2.08
DDX56Q9NY93 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC2.05□□□□□ -2.08
DDX56Q9NY93 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
DDX56Q9NY93 Y_RNA.82-201ENST00000363000 102 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 Y_RNA.92-201ENST00000363043 102 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 Y_RNA.235-201ENST00000364412 102 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 U8.5-201ENST00000364528 136 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 Y_RNA.306-201ENST00000365015 102 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 Y_RNA.312-201ENST00000365089 102 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 Y_RNA.322-201ENST00000365151 102 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 Y_RNA.478-201ENST00000384358 107 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 SNORA12.1-201ENST00000390873 148 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 Y_RNA.618-201ENST00000410949 107 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 RNA5SP508-201ENST00000411327 119 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC2.05□□□□□ -2.08
DDX56Q9NY93 Z98742.3-201ENST00000418637 326 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 RPL31P63-201ENST00000422565 375 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 SNX2P2-201ENST00000424553 323 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 Y_RNA.650-201ENST00000459002 102 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 RNU6-437P-201ENST00000459408 95 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 RPL23AP94-201ENST00000512518 302 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 RNU6-1007P-201ENST00000516586 107 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 Y_RNA.777-201ENST00000516982 102 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.05□□□□□ -2.08
DDX56Q9NY93 CBX3P4-201ENST00000538909 354 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 MIR3937-201ENST00000580135 106 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 MIR4285-201ENST00000581001 85 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 MIR4762-201ENST00000585261 75 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 AC005357.1-201ENST00000588399 301 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 Y_RNA.771-201ENST00000598668 102 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 AC120024.3-201ENST00000603167 156 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 Y_RNA.789-201ENST00000622480 102 ntBASIC2.05□□□□□ -2.08
DDX56Q9NY93 MIR302D-201ENST00000362275 68 ntBASIC2.04□□□□□ -2.08
DDX56Q9NY93 RNU6-1205P-201ENST00000363625 106 ntBASIC2.04□□□□□ -2.08
DDX56Q9NY93 Y_RNA.293-201ENST00000364908 93 ntBASIC2.04□□□□□ -2.08
DDX56Q9NY93 RNU6-163P-201ENST00000384396 106 ntBASIC2.04□□□□□ -2.08
DDX56Q9NY93 RNU6-131P-201ENST00000391144 107 ntBASIC2.04□□□□□ -2.08
DDX56Q9NY93 MIR891A-201ENST00000401237 79 ntBASIC2.04□□□□□ -2.08
DDX56Q9NY93 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.04□□□□□ -2.08
DDX56Q9NY93 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.04□□□□□ -2.08
DDX56Q9NY93 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.04□□□□□ -2.08
DDX56Q9NY93 SNORD2.1-201ENST00000458762 69 ntBASIC2.04□□□□□ -2.08
DDX56Q9NY93 RNA5SP445-201ENST00000515889 115 ntBASIC2.04□□□□□ -2.08
DDX56Q9NY93 AC110588.1-201ENST00000559699 137 ntBASIC2.04□□□□□ -2.08
DDX56Q9NY93 MIR4282-201ENST00000583613 67 ntBASIC2.04□□□□□ -2.08
DDX56Q9NY93 AC006006.1-201ENST00000603082 144 ntBASIC2.04□□□□□ -2.08
DDX56Q9NY93 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC2.04□□□□□ -2.08
DDX56Q9NY93 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC2.03□□□□□ -2.08
DDX56Q9NY93 RNU6-199P-201ENST00000362954 107 ntBASIC2.03□□□□□ -2.08
DDX56Q9NY93 RNU6-674P-201ENST00000363831 107 ntBASIC2.03□□□□□ -2.08
DDX56Q9NY93 Y_RNA.269-201ENST00000364685 89 ntBASIC2.03□□□□□ -2.08
DDX56Q9NY93 RN7SKP223-201ENST00000410582 62 ntBASIC2.03□□□□□ -2.08
DDX56Q9NY93 MLLT10P1-201ENST00000418346 262 ntBASIC2.03□□□□□ -2.08
DDX56Q9NY93 SNRPGP10-201ENST00000432323 225 ntBASIC2.03□□□□□ -2.08
DDX56Q9NY93 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC2.03□□□□□ -2.08
DDX56Q9NY93 SNORD116-28-201ENST00000516123 91 ntBASIC2.03□□□□□ -2.08
DDX56Q9NY93 RNU6-111P-201ENST00000517179 105 ntBASIC2.03□□□□□ -2.08
DDX56Q9NY93 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC2.03□□□□□ -2.08
DDX56Q9NY93 AC064859.1-201ENST00000624741 174 ntBASIC2.03□□□□□ -2.08
DDX56Q9NY93 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.03□□□□□ -2.08
DDX56Q9NY93 RNU6-1084P-201ENST00000362498 107 ntBASIC2.02□□□□□ -2.09
DDX56Q9NY93 RNU6-833P-201ENST00000363486 107 ntBASIC2.02□□□□□ -2.09
DDX56Q9NY93 RNU4-10P-201ENST00000364383 140 ntBASIC2.02□□□□□ -2.09
DDX56Q9NY93 SUMO2P12-201ENST00000405924 140 ntBASIC2.02□□□□□ -2.09
DDX56Q9NY93 MIR1278-201ENST00000408753 81 ntBASIC2.02□□□□□ -2.09
DDX56Q9NY93 Y_RNA.638-201ENST00000459374 113 ntBASIC2.02□□□□□ -2.09
DDX56Q9NY93 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC2.02□□□□□ -2.09
DDX56Q9NY93 MIR4778-201ENST00000577635 80 ntBASIC2.02□□□□□ -2.09
DDX56Q9NY93 AC087685.1-201ENST00000587507 141 ntBASIC2.02□□□□□ -2.09
DDX56Q9NY93 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC2.02□□□□□ -2.09
DDX56Q9NY93 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC2.01□□□□□ -2.09
DDX56Q9NY93 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC2.01□□□□□ -2.09
DDX56Q9NY93 RNU6-379P-201ENST00000363813 104 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 Y_RNA.242-201ENST00000364473 110 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 Y_RNA.489-201ENST00000384410 101 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 MT-TG-201ENST00000387429 68 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 SNORA3.2-201ENST00000408221 125 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 SNORA11.2-201ENST00000408318 127 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 RNU2-2P-201ENST00000410396 191 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 RNU6-383P-201ENST00000410864 94 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 AC027119.1-201ENST00000440877 241 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 AC023449.1-201ENST00000454464 154 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 RNU6-322P-201ENST00000516010 103 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 AC012493.3-201ENST00000604494 112 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 AL442067.1-201ENST00000613261 223 ntBASIC2.01□□□□□ -2.09
DDX56Q9NY93 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.01□□□□□ -2.09
DDX56Q9NY93 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2□□□□□ -2.09
DDX56Q9NY93 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
DDX56Q9NY93 MIRLET7C-201ENST00000362160 84 ntBASIC2□□□□□ -2.09
DDX56Q9NY93 Y_RNA.292-201ENST00000364904 97 ntBASIC2□□□□□ -2.09
DDX56Q9NY93 snoU2-30.1-201ENST00000365012 70 ntBASIC2□□□□□ -2.09
DDX56Q9NY93 MIR522-201ENST00000385071 87 ntBASIC2□□□□□ -2.09
DDX56Q9NY93 SNORD58.1-201ENST00000391313 66 ntBASIC2□□□□□ -2.09
DDX56Q9NY93 HMGN2P32-201ENST00000444648 269 ntBASIC2□□□□□ -2.09
DDX56Q9NY93 RNU6-902P-201ENST00000517212 91 ntBASIC2□□□□□ -2.09
DDX56Q9NY93 AC011921.3-201ENST00000605540 361 ntBASIC2□□□□□ -2.09
DDX56Q9NY93 AL121890.5-201ENST00000620848 304 ntBASIC2□□□□□ -2.09
DDX56Q9NY93 AL365265.1-201ENST00000621045 234 ntBASIC2□□□□□ -2.09
DDX56Q9NY93 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 191.5 ms