Protein–RNA interactions for Protein: Q9NY46

SCN3A, Sodium channel protein type 3 subunit alpha, humanhuman

Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3AQ9NY46 RNU6-648P-201ENST00000410190 107 ntBASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 AC092447.3-201ENST00000426027 686 ntBASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC-0.25□□□□□ -2.45
SCN3AQ9NY46 RNY3P3-201ENST00000363816 102 ntBASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 RNU6-324P-201ENST00000363957 106 ntBASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 SNORD50B-201ENST00000364995 70 ntBASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 RNU6-38P-201ENST00000384085 107 ntBASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 AL390783.1-203ENST00000457058 248 ntTSL 3 BASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 Y_RNA.682-201ENST00000516457 100 ntBASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 RPL23AP91-201ENST00000569211 455 ntBASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 AC005176.2-201ENST00000596933 147 ntBASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 AC098679.4-201ENST00000624241 654 ntBASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 SNORD45.4-201ENST00000516629 73 ntBASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 MIR3678-201ENST00000578455 94 ntBASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 AL121757.2-201ENST00000611223 313 ntBASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 Pinc.1-201ENST00000616452 154 ntBASIC-0.26□□□□□ -2.45
SCN3AQ9NY46 Y_RNA.170-201ENST00000363746 110 ntBASIC-0.27□□□□□ -2.45
SCN3AQ9NY46 SNORD14C-201ENST00000365382 88 ntBASIC-0.27□□□□□ -2.45
SCN3AQ9NY46 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC-0.27□□□□□ -2.45
SCN3AQ9NY46 RNU6-135P-201ENST00000516769 101 ntBASIC-0.27□□□□□ -2.45
SCN3AQ9NY46 AC133485.4-201ENST00000561835 220 ntBASIC-0.27□□□□□ -2.45
SCN3AQ9NY46 AC100830.2-201ENST00000581636 240 ntBASIC-0.27□□□□□ -2.45
SCN3AQ9NY46 AL162413.1-201ENST00000603198 110 ntBASIC-0.27□□□□□ -2.45
SCN3AQ9NY46 SNORA72-201ENST00000384339 132 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 MT-TF-201ENST00000387314 71 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 SNORA40.9-201ENST00000515895 93 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 RNU6-63P-201ENST00000516690 95 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 ZNF519P2-201ENST00000557032 169 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 AC019193.3-201ENST00000609144 554 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 uc_338.6-201ENST00000613544 171 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 NEAT1_2.1-201ENST00000620525 105 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 Y_RNA.368-201ENST00000365547 113 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 AL445567.1-201ENST00000439121 144 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 AC091179.3-201ENST00000474761 144 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 SNORA25.10-201ENST00000515926 124 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 MIR2355-201ENST00000517199 87 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 MTND5P34-201ENST00000568888 325 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 AC124303.1-201ENST00000605703 360 ntBASIC-0.28□□□□□ -2.45
SCN3AQ9NY46 SNORA18.1-201ENST00000363418 128 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 RNU6-961P-201ENST00000363893 105 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 RNU6-595P-201ENST00000363944 107 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 U8.5-201ENST00000364528 136 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 RNU6-756P-201ENST00000383997 107 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 SNORD38B-201ENST00000384690 67 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 RNU6-855P-201ENST00000410395 104 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 RNU6-1068P-201ENST00000410958 103 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 RNU6-847P-201ENST00000411115 108 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 RNU6-1001P-201ENST00000411265 100 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 AL139396.1-201ENST00000421137 167 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 AC092954.2-201ENST00000609103 430 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 AC006441.5-201ENST00000612680 209 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 SNORD38B-202ENST00000625943 69 ntBASIC-0.29□□□□□ -2.46
SCN3AQ9NY46 RNU6-1175P-201ENST00000365200 107 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 SNORD83.1-201ENST00000411362 77 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 RPL39P25-201ENST00000449384 154 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 RNU6-469P-201ENST00000516253 101 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 AC124864.2-201ENST00000624736 186 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 Y_RNA.242-201ENST00000364473 110 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 RNA5SP128-201ENST00000365305 116 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 SNORD116-9-201ENST00000384000 95 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 SNORD116-3-201ENST00000384287 95 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 SNORD116-8-201ENST00000384365 95 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 SNORD116-7-201ENST00000384404 95 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 SNORD116-5-201ENST00000384462 95 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 RNU6-1184P-201ENST00000384588 108 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 RNU6-136P-201ENST00000384663 107 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 Y_RNA.552-201ENST00000384665 112 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 MIR938-201ENST00000401216 83 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 RNU6ATAC6P-201ENST00000408132 126 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 MIR1257-201ENST00000408490 117 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 AL590632.1-201ENST00000424289 371 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 BTF3P11-201ENST00000426582 477 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 ERLEC1P1-201ENST00000433806 578 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 SNORD123-201ENST00000459473 70 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 AC083798.1-201ENST00000472671 131 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 SNORA31.14-201ENST00000516728 116 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 RNU6ATAC22P-201ENST00000516794 89 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 RNU7-156P-201ENST00000517214 74 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 LINC02277-202ENST00000556472 453 ntTSL 3 BASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 AP001330.5-201ENST00000607176 411 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 AC090517.2-201ENST00000614966 680 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 DLEU2_5.1-201ENST00000615567 84 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 MIR3674-201ENST00000636576 68 ntBASIC-0.3□□□□□ -2.46
SCN3AQ9NY46 MIR873-201ENST00000401120 77 ntBASIC-0.31□□□□□ -2.46
SCN3AQ9NY46 RNU2-66P-201ENST00000410650 161 ntBASIC-0.31□□□□□ -2.46
SCN3AQ9NY46 AL031667.1-201ENST00000440222 725 ntBASIC-0.31□□□□□ -2.46
SCN3AQ9NY46 MTND3P3-201ENST00000505004 126 ntBASIC-0.31□□□□□ -2.46
SCN3AQ9NY46 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC-0.31□□□□□ -2.46
SCN3AQ9NY46 RNU6-436P-201ENST00000516171 114 ntBASIC-0.31□□□□□ -2.46
SCN3AQ9NY46 AC105029.1-201ENST00000520250 669 ntBASIC-0.31□□□□□ -2.46
SCN3AQ9NY46 AC245884.10-201ENST00000597355 337 ntBASIC-0.31□□□□□ -2.46
SCN3AQ9NY46 AC109347.2-201ENST00000610220 349 ntBASIC-0.31□□□□□ -2.46
SCN3AQ9NY46 AC023510.2-201ENST00000622162 746 ntBASIC-0.31□□□□□ -2.46
Retrieved 100 of 98,524 protein–RNA pairs in 208.2 ms