Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 BX248123.2-201ENST00000606318 124 ntBASIC1.33□□□□□ -2.2
CHMP1AQ9HD42 RNU6-1272P-201ENST00000362776 107 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 RNU6-674P-201ENST00000363831 107 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 RNU6-899P-201ENST00000363947 107 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 Y_RNA.217-201ENST00000364214 105 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 Y_RNA.376-201ENST00000365638 108 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 RNU6-738P-201ENST00000384531 106 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 MIR320A-201ENST00000385302 82 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 MIR1304-201ENST00000408243 91 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 MIR1298-201ENST00000408783 112 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 Y_RNA.641-201ENST00000459414 105 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 NDUFA4P2-201ENST00000489989 244 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 AC037487.3-201ENST00000606668 112 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 GHRLOS.1-201ENST00000610995 70 ntBASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.32□□□□□ -2.2
CHMP1AQ9HD42 RNU6-1084P-201ENST00000362498 107 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 Y_RNA.145-201ENST00000363527 102 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 SNORD26-201ENST00000384147 75 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 RNU6-514P-201ENST00000384208 107 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 AL627390.1-201ENST00000396055 340 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 AL451046.2-201ENST00000403074 277 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 MTND4LP30-201ENST00000454092 297 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 SERF1AP1-201ENST00000514575 187 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 SNORA27.4-201ENST00000516650 95 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 RN7SKP88-201ENST00000516847 250 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 SCARNA24.2-201ENST00000516968 130 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 DEFB108E-201ENST00000524692 240 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 FAM106DP-201ENST00000586416 501 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 AC008737.2-201ENST00000599446 118 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 7SK.8-201ENST00000612110 250 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 7SK.11-201ENST00000615477 250 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 AP001282.2-201ENST00000616149 309 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 AC013791.1-201ENST00000616619 62 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 7SK.13-201ENST00000622040 250 ntBASIC1.31□□□□□ -2.2
CHMP1AQ9HD42 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
CHMP1AQ9HD42 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.3□□□□□ -2.2
CHMP1AQ9HD42 RNU6-238P-201ENST00000363313 106 ntBASIC1.3□□□□□ -2.2
CHMP1AQ9HD42 snoU2-30.1-201ENST00000365012 70 ntBASIC1.3□□□□□ -2.2
CHMP1AQ9HD42 MIR504-201ENST00000385065 83 ntBASIC1.3□□□□□ -2.2
CHMP1AQ9HD42 TRBVB-201ENST00000477100 408 ntBASIC1.3□□□□□ -2.2
CHMP1AQ9HD42 RNU6-322P-201ENST00000516010 103 ntBASIC1.3□□□□□ -2.2
CHMP1AQ9HD42 MIR7974-201ENST00000615835 79 ntBASIC1.3□□□□□ -2.2
CHMP1AQ9HD42 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
CHMP1AQ9HD42 UBE2WP1-201ENST00000362030 340 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 Y_RNA.336-201ENST00000365307 109 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 MIR452-201ENST00000385020 85 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 MIR150-201ENST00000385048 84 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 MT-TW-201ENST00000387382 68 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 BTF3P11-201ENST00000426582 477 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 UBL5P3-201ENST00000475112 231 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 Y_RNA.714-201ENST00000517065 90 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 AC090142.3-201ENST00000519012 385 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 RPL23AP91-201ENST00000569211 455 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 SNORD53B-201ENST00000577887 78 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 AL008718.3-201ENST00000610217 321 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 MIR6845-201ENST00000613182 61 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 JPX_2.1-201ENST00000614161 69 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 snoU18.1-201ENST00000629629 71 ntBASIC1.29□□□□□ -2.2
CHMP1AQ9HD42 RNU6-1205P-201ENST00000363625 106 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 RNU1-42P-201ENST00000364033 160 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 Y_RNA.237-201ENST00000364439 102 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 RNU6-144P-201ENST00000383951 107 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 RNU6-713P-201ENST00000384761 107 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 Y_RNA.574-201ENST00000384766 95 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 MIR516B2-201ENST00000385190 85 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 SNORD11-201ENST00000459124 84 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 RNU6-295P-201ENST00000516901 104 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 AL117187.1-201ENST00000555482 181 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 MIR5692C2-201ENST00000577959 77 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 MIR2681-201ENST00000581814 105 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 AL360085.1-201ENST00000604713 532 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 MIR8062-201ENST00000621515 85 ntBASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.28□□□□□ -2.2
CHMP1AQ9HD42 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC1.28□□□□□ -2.21
CHMP1AQ9HD42 RNA5SP327-201ENST00000362494 101 ntBASIC1.27□□□□□ -2.21
CHMP1AQ9HD42 RNU6-383P-201ENST00000410864 94 ntBASIC1.27□□□□□ -2.21
CHMP1AQ9HD42 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.27□□□□□ -2.21
CHMP1AQ9HD42 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.27□□□□□ -2.21
CHMP1AQ9HD42 AC136443.5-201ENST00000603741 370 ntBASIC1.27□□□□□ -2.21
CHMP1AQ9HD42 AL442644.1-201ENST00000454390 3105 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 Y_RNA.275-201ENST00000364726 110 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 RNU6-472P-201ENST00000384299 107 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 Y_RNA.483-201ENST00000384380 101 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 MIR517C-201ENST00000385103 95 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 U8.13-201ENST00000390842 128 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 SNRPGP14-201ENST00000435400 219 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 AC015922.2-201ENST00000435593 184 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 HMGN2P32-201ENST00000444648 269 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 SCARNA15.1-201ENST00000516384 125 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 AL161670.1-201ENST00000554348 137 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 AC008507.4-201ENST00000585464 127 ntBASIC1.26□□□□□ -2.21
CHMP1AQ9HD42 AC087685.1-201ENST00000587507 141 ntBASIC1.26□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 176.6 ms