Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 MIR15B-201ENST00000385045 98 ntBASIC0.15□□□□□ -2.38
USP42Q9H9J4 SNORD12B-201ENST00000410433 91 ntBASIC0.15□□□□□ -2.38
USP42Q9H9J4 AL353997.1-201ENST00000432936 108 ntBASIC0.15□□□□□ -2.38
USP42Q9H9J4 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC0.15□□□□□ -2.38
USP42Q9H9J4 TRBVB-201ENST00000477100 408 ntBASIC0.15□□□□□ -2.38
USP42Q9H9J4 RNU6-1012P-201ENST00000516606 109 ntBASIC0.15□□□□□ -2.38
USP42Q9H9J4 AL355375.2-201ENST00000574825 175 ntBASIC0.15□□□□□ -2.38
USP42Q9H9J4 AC018462.2-201ENST00000605375 395 ntBASIC0.15□□□□□ -2.38
USP42Q9H9J4 AL355073.2-201ENST00000612106 557 ntBASIC0.15□□□□□ -2.38
USP42Q9H9J4 MIR3662-201ENST00000637030 95 ntBASIC0.15□□□□□ -2.38
USP42Q9H9J4 RNU6-1301P-201ENST00000362724 104 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 Y_RNA.101-201ENST00000363154 102 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 snoU2-30.1-201ENST00000365012 70 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 RNU6-700P-201ENST00000391043 107 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 AL031003.1-201ENST00000404229 172 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 AC015818.7-201ENST00000428754 109 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 AC087499.7-201ENST00000441958 109 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 MTND1P1-201ENST00000445453 368 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 UBE2V1P7-201ENST00000446395 340 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 MTND5P5-201ENST00000503764 376 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 AC011352.1-201ENST00000512300 793 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 RNU6-408P-201ENST00000515910 100 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 RNU6-966P-201ENST00000516479 104 ntBASIC0.14□□□□□ -2.39
USP42Q9H9J4 AC007991.2-201ENST00000520185 102 ntTSL 5 BASIC0.14□□□□□ -2.39
USP42Q9H9J4 RNU4-45P-201ENST00000365469 141 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 RNU6-1310P-201ENST00000384153 107 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 SNORD116-1-201ENST00000384335 95 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 MIR520H-201ENST00000385126 88 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 RNU2-16P-201ENST00000410712 136 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 RNU2-61P-201ENST00000411069 191 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 RNU6-1199P-201ENST00000411249 104 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC0.13□□□□□ -2.39
USP42Q9H9J4 MIR2115-201ENST00000516657 100 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 MIR3612-201ENST00000579753 87 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 MIR548AO-201ENST00000579992 96 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 AC060780.3-201ENST00000589464 80 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 AC015726.2-201ENST00000620112 122 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 SNORD44.1-201ENST00000363202 61 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 RNU6-580P-201ENST00000365159 107 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 Y_RNA.594-201ENST00000410373 140 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 RNU6-373P-201ENST00000411247 98 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 SNORD83.1-201ENST00000411362 77 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.13□□□□□ -2.39
USP42Q9H9J4 AL359636.3-201ENST00000439471 301 ntTSL 2 BASIC0.13□□□□□ -2.39
USP42Q9H9J4 HMGN2P32-201ENST00000444648 269 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 MTND2P38-201ENST00000522536 667 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.13□□□□□ -2.39
USP42Q9H9J4 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC0.13□□□□□ -2.39
USP42Q9H9J4 MIR4790-201ENST00000577799 79 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 MIR4431-201ENST00000579990 94 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 MIR4768-201ENST00000585270 74 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 MIR6086-201ENST00000638065 55 ntBASIC0.13□□□□□ -2.39
USP42Q9H9J4 KIF20B-201ENST00000260753 6306 ntAPPRIS P3 TSL 1 (best) BASIC0.12□□□□□ -2.39
USP42Q9H9J4 Y_RNA.2-201ENST00000362330 96 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 MIR520F-201ENST00000384824 87 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 RNU6-131P-201ENST00000391144 107 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 AC074085.1-201ENST00000413598 418 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 AL121872.1-201ENST00000420327 281 ntTSL 5 BASIC0.12□□□□□ -2.39
USP42Q9H9J4 SNRPGP14-201ENST00000435400 219 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 MTND1P29-201ENST00000448112 647 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 AC004930.1-201ENST00000470677 254 ntTSL 2 BASIC0.12□□□□□ -2.39
USP42Q9H9J4 RNU6-506P-201ENST00000516553 94 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 RNU6-314P-201ENST00000516574 104 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 AC109635.3-201ENST00000529536 185 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 AC005972.2-201ENST00000604690 348 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 MIR1244-1-201ENST00000612829 85 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 AC240442.1-201ENST00000616055 283 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 MIR1244-3-201ENST00000635744 85 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 MIR1244-2-201ENST00000636449 85 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 MIR1244-4-202ENST00000636813 85 ntBASIC0.12□□□□□ -2.39
USP42Q9H9J4 RNA5SP517-201ENST00000364724 117 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 RNU6-396P-201ENST00000365369 105 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 SNORA72-201ENST00000384339 132 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 MIR1295A-201ENST00000408463 79 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 RNU2-54P-201ENST00000410299 190 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 RNU6-1050P-201ENST00000410388 107 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC0.11□□□□□ -2.39
USP42Q9H9J4 SNRPGP12-201ENST00000449481 213 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 RPL30P15-201ENST00000457129 321 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.11□□□□□ -2.39
USP42Q9H9J4 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.11□□□□□ -2.39
USP42Q9H9J4 RNU4-49P-201ENST00000516080 140 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 RNU6-436P-201ENST00000516171 114 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 Y_RNA.682-201ENST00000516457 100 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 AC022616.4-201ENST00000522985 181 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 RBM11P1-201ENST00000604951 799 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 AC092634.7-201ENST00000621022 103 ntBASIC0.11□□□□□ -2.39
USP42Q9H9J4 RNU6-934P-201ENST00000365154 107 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 Y_RNA.404-201ENST00000383978 102 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 RNU6-1013P-201ENST00000384180 107 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 Y_RNA.554-201ENST00000384672 102 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 RNU6-205P-201ENST00000390858 107 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 RNU6-679P-201ENST00000391003 106 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC0.1□□□□□ -2.39
USP42Q9H9J4 RPL7P42-201ENST00000481005 679 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 RPS29P25-201ENST00000481709 171 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC0.1□□□□□ -2.39
USP42Q9H9J4 AC116353.2-201ENST00000505332 712 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 SNORA25.12-201ENST00000516202 82 ntBASIC0.1□□□□□ -2.39
USP42Q9H9J4 RNU6-1016P-201ENST00000516689 94 ntBASIC0.1□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms