Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 SNORA70.12-201ENST00000516084 153 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 SNORA27.4-201ENST00000516650 95 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 AC091178.2-201ENST00000584401 117 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 AL359075.3-201ENST00000613288 217 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.53□□□□□ -2.16
UPF3AQ9H1J1 SNORA25.1-201ENST00000362326 128 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.60-201ENST00000362831 98 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 RNU6-112P-201ENST00000363599 104 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.341-201ENST00000365341 102 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.350-201ENST00000365409 98 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 SNORA12.1-201ENST00000390873 148 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 SNORA53-201ENST00000391141 249 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 MIR934-201ENST00000401241 83 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 AL162725.1-201ENST00000435405 301 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 AC104332.1-201ENST00000440471 797 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 MTND4LP30-201ENST00000454092 297 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 RPL39P38-201ENST00000467018 153 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 AC091021.1-201ENST00000468051 388 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 AC004223.1-201ENST00000479840 271 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 RNA5SP437-201ENST00000517249 129 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 AC136628.3-201ENST00000521868 290 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 AC011921.3-201ENST00000605540 361 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 AL008718.3-201ENST00000610217 321 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 AC091895.1-201ENST00000624494 256 ntBASIC1.52□□□□□ -2.17
UPF3AQ9H1J1 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.44-201ENST00000362676 108 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 RNU6-1272P-201ENST00000362776 107 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.76-201ENST00000362931 109 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 SNORA63D-201ENST00000364359 132 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.277-201ENST00000364754 102 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 SNORD114-22-201ENST00000365423 72 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 SNORA72.4-201ENST00000384174 132 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.456-201ENST00000384232 111 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 RNA5SP109-201ENST00000391010 116 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 RPS4XP11-201ENST00000446897 772 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 AC024995.1-201ENST00000523014 93 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 snoU18.1-201ENST00000629629 71 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 U6.104-201ENST00000637979 90 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 AC134026.1-201ENST00000623249 2239 ntBASIC1.51□□□□□ -2.17
UPF3AQ9H1J1 MIR96-201ENST00000362288 78 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 RNU6-1019P-201ENST00000364424 107 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 U8.7-201ENST00000364940 136 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 SNORA4.2-201ENST00000365313 147 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.352-201ENST00000365439 102 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.416-201ENST00000384014 113 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 RNU6-1289P-201ENST00000384431 106 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 SNORD58.1-201ENST00000391313 66 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 RNU6-710P-201ENST00000410424 105 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 SNORD2.1-201ENST00000458762 69 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 RNU7-141P-201ENST00000459304 62 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 RNU1-142P-201ENST00000516682 145 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 MIR3198-2-201ENST00000577868 80 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 AC069114.2-201ENST00000604699 304 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.5□□□□□ -2.17
UPF3AQ9H1J1 AC245060.5-201ENST00000610778 3293 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 AC018630.2-201ENST00000534866 2403 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.20-201ENST00000362479 113 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 RNU6-376P-201ENST00000384731 106 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 MIR515-2-201ENST00000384883 83 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 MIR515-1-201ENST00000384884 83 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 SNORA40.6-201ENST00000391153 128 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 RNU6-1023P-201ENST00000516137 106 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 SNORA31.10-201ENST00000516482 106 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 SNORA44.1-201ENST00000517031 108 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 MIR4282-201ENST00000583613 67 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 AL512605.2-201ENST00000592972 256 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 AL078604.3-201ENST00000615580 211 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 MIR6079-201ENST00000635807 62 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 AC068647.2-201ENST00000637380 353 ntBASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.49□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.82-201ENST00000363000 102 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.92-201ENST00000363043 102 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 RNU6-379P-201ENST00000363813 104 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 SNORD27-201ENST00000363981 72 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.235-201ENST00000364412 102 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.306-201ENST00000365015 102 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.312-201ENST00000365089 102 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.322-201ENST00000365151 102 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 RNA5SP323-201ENST00000391094 133 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 AC009310.1-201ENST00000414414 451 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 BTF3P11-201ENST00000426582 477 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 HSPE1P9-201ENST00000440046 311 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 Y_RNA.650-201ENST00000459002 102 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 AC117454.1-201ENST00000491120 168 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 SNORD116-28-201ENST00000516123 91 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 RNU6-1278P-201ENST00000516130 107 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 RNU7-115P-201ENST00000516433 55 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 RNU6-1291P-201ENST00000516591 104 ntBASIC1.48□□□□□ -2.17
UPF3AQ9H1J1 SNORA31.17-201ENST00000516953 127 ntBASIC1.48□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 214.1 ms