Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 Y_RNA.55-201ENST00000362797 102 ntBASIC-1.41□□□□□ -2.64
SCAPERQ9BY12 SNORA1.2-201ENST00000365189 134 ntBASIC-1.41□□□□□ -2.64
SCAPERQ9BY12 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC-1.41□□□□□ -2.64
SCAPERQ9BY12 AC073464.1-201ENST00000429823 534 ntBASIC-1.41□□□□□ -2.64
SCAPERQ9BY12 AC091179.3-201ENST00000474761 144 ntBASIC-1.41□□□□□ -2.64
SCAPERQ9BY12 MTCO3P23-201ENST00000561363 289 ntBASIC-1.41□□□□□ -2.64
SCAPERQ9BY12 AC005609.4-201ENST00000625071 447 ntBASIC-1.41□□□□□ -2.64
SCAPERQ9BY12 Y_RNA.125-201ENST00000363371 111 ntBASIC-1.42□□□□□ -2.64
SCAPERQ9BY12 Y_RNA.465-201ENST00000384293 102 ntBASIC-1.42□□□□□ -2.64
SCAPERQ9BY12 SNORD93-201ENST00000408813 74 ntBASIC-1.42□□□□□ -2.64
SCAPERQ9BY12 AL354751.2-201ENST00000415471 210 ntBASIC-1.42□□□□□ -2.64
SCAPERQ9BY12 AL008987.1-201ENST00000415528 237 ntBASIC-1.42□□□□□ -2.64
SCAPERQ9BY12 snoU13.2-201ENST00000459201 104 ntBASIC-1.42□□□□□ -2.64
SCAPERQ9BY12 AC112204.1-201ENST00000502591 103 ntBASIC-1.42□□□□□ -2.64
SCAPERQ9BY12 RNU6-1265P-201ENST00000516342 103 ntBASIC-1.42□□□□□ -2.64
SCAPERQ9BY12 Y_RNA.692-201ENST00000516627 105 ntBASIC-1.42□□□□□ -2.64
SCAPERQ9BY12 PCMTD1P2-201ENST00000565017 355 ntBASIC-1.42□□□□□ -2.64
SCAPERQ9BY12 AGGF1P4-201ENST00000568249 801 ntBASIC-1.42□□□□□ -2.64
SCAPERQ9BY12 RNY4P27-201ENST00000363341 96 ntBASIC-1.43□□□□□ -2.64
SCAPERQ9BY12 RNY1P12-201ENST00000364251 105 ntBASIC-1.43□□□□□ -2.64
SCAPERQ9BY12 Y_RNA.484-201ENST00000384389 103 ntBASIC-1.43□□□□□ -2.64
SCAPERQ9BY12 Y_RNA.559-201ENST00000384686 107 ntBASIC-1.43□□□□□ -2.64
SCAPERQ9BY12 RNU6-131P-201ENST00000391144 107 ntBASIC-1.43□□□□□ -2.64
SCAPERQ9BY12 Y_RNA.616-201ENST00000410835 95 ntBASIC-1.43□□□□□ -2.64
SCAPERQ9BY12 MTCO2P27-201ENST00000420740 428 ntBASIC-1.43□□□□□ -2.64
SCAPERQ9BY12 Y_RNA.714-201ENST00000517065 90 ntBASIC-1.43□□□□□ -2.64
SCAPERQ9BY12 NDUFV2-AS1-202ENST00000583081 399 ntTSL 5 BASIC-1.43□□□□□ -2.64
SCAPERQ9BY12 RNU6-324P-201ENST00000363957 106 ntBASIC-1.44□□□□□ -2.64
SCAPERQ9BY12 Y_RNA.253-201ENST00000364562 112 ntBASIC-1.44□□□□□ -2.64
SCAPERQ9BY12 RNU6-726P-201ENST00000364680 107 ntBASIC-1.44□□□□□ -2.64
SCAPERQ9BY12 RNU6-1292P-201ENST00000383856 107 ntBASIC-1.44□□□□□ -2.64
SCAPERQ9BY12 SNORA1-201ENST00000384107 130 ntBASIC-1.44□□□□□ -2.64
SCAPERQ9BY12 RNU6-809P-201ENST00000384461 107 ntBASIC-1.44□□□□□ -2.64
SCAPERQ9BY12 RNU6-107P-201ENST00000516643 102 ntBASIC-1.44□□□□□ -2.64
SCAPERQ9BY12 AP003181.2-201ENST00000528941 181 ntBASIC-1.44□□□□□ -2.64
SCAPERQ9BY12 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC-1.44□□□□□ -2.64
SCAPERQ9BY12 SNORD115-2-201ENST00000362842 82 ntBASIC-1.45□□□□□ -2.64
SCAPERQ9BY12 RNU6-490P-201ENST00000362985 107 ntBASIC-1.45□□□□□ -2.64
SCAPERQ9BY12 RNU5F-3P-201ENST00000363767 117 ntBASIC-1.45□□□□□ -2.64
SCAPERQ9BY12 SNRPGP10-201ENST00000432323 225 ntBASIC-1.45□□□□□ -2.64
SCAPERQ9BY12 AL512286.1-201ENST00000439244 400 ntBASIC-1.45□□□□□ -2.64
SCAPERQ9BY12 RPL7P42-201ENST00000481005 679 ntBASIC-1.45□□□□□ -2.64
SCAPERQ9BY12 RNU7-181P-201ENST00000517234 74 ntBASIC-1.45□□□□□ -2.64
SCAPERQ9BY12 hsa-mir-3607.1-201ENST00000637229 79 ntBASIC-1.45□□□□□ -2.64
SCAPERQ9BY12 MIR30D-201ENST00000362283 70 ntBASIC-1.46□□□□□ -2.64
SCAPERQ9BY12 Y_RNA.97-201ENST00000363094 102 ntBASIC-1.46□□□□□ -2.64
SCAPERQ9BY12 Y_RNA.179-201ENST00000363844 90 ntBASIC-1.46□□□□□ -2.64
SCAPERQ9BY12 Y_RNA.536-201ENST00000384621 113 ntBASIC-1.46□□□□□ -2.64
SCAPERQ9BY12 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC-1.46□□□□□ -2.64
SCAPERQ9BY12 AC010387.1-201ENST00000507526 487 ntTSL 2 BASIC-1.46□□□□□ -2.64
SCAPERQ9BY12 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC-1.46□□□□□ -2.64
SCAPERQ9BY12 AC073869.9-201ENST00000641610 120 ntBASIC-1.46□□□□□ -2.64
SCAPERQ9BY12 Y_RNA.13-201ENST00000362403 112 ntBASIC-1.47□□□□□ -2.64
SCAPERQ9BY12 RNU6-280P-201ENST00000364145 104 ntBASIC-1.47□□□□□ -2.64
SCAPERQ9BY12 RNU6-1133P-201ENST00000410963 100 ntBASIC-1.47□□□□□ -2.64
SCAPERQ9BY12 RNU6-1199P-201ENST00000411249 104 ntBASIC-1.47□□□□□ -2.64
SCAPERQ9BY12 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC-1.47□□□□□ -2.64
SCAPERQ9BY12 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC-1.47□□□□□ -2.64
SCAPERQ9BY12 MIR4306-201ENST00000583390 91 ntBASIC-1.47□□□□□ -2.64
SCAPERQ9BY12 MIR6082-201ENST00000613604 109 ntBASIC-1.47□□□□□ -2.64
SCAPERQ9BY12 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC-1.47□□□□□ -2.64
SCAPERQ9BY12 SNORD14E-201ENST00000364009 85 ntBASIC-1.48□□□□□ -2.65
SCAPERQ9BY12 Y_RNA.326-201ENST00000365176 113 ntBASIC-1.48□□□□□ -2.65
SCAPERQ9BY12 Y_RNA.375-201ENST00000365625 101 ntBASIC-1.48□□□□□ -2.65
SCAPERQ9BY12 RNU6-1127P-201ENST00000384580 107 ntBASIC-1.48□□□□□ -2.65
SCAPERQ9BY12 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC-1.48□□□□□ -2.65
SCAPERQ9BY12 AC021146.9-201ENST00000512503 156 ntBASIC-1.48□□□□□ -2.65
SCAPERQ9BY12 SCARNA24.1-201ENST00000516465 137 ntBASIC-1.48□□□□□ -2.65
SCAPERQ9BY12 MTND4LP18-201ENST00000526864 291 ntBASIC-1.48□□□□□ -2.65
SCAPERQ9BY12 AC008507.2-201ENST00000588402 1176 ntBASIC-1.48□□□□□ -2.65
SCAPERQ9BY12 NFIA-AS1-206ENST00000630199 220 ntTSL 5 BASIC-1.48□□□□□ -2.65
SCAPERQ9BY12 Y_RNA.1-201ENST00000352915 104 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 RNU6-784P-201ENST00000384330 106 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 RNU6-291P-201ENST00000384720 107 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 MIR516B1-201ENST00000385211 90 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 SNORD73A-201ENST00000386062 65 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 AC236972.2-201ENST00000434979 310 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 AC008883.1-201ENST00000506562 193 ntTSL 3 BASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 AC011352.1-201ENST00000512300 793 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 RNU6-765P-201ENST00000516916 99 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 MIR4775-201ENST00000581168 75 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 BNIP3P40-201ENST00000596017 556 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 Y_RNA.399-201ENST00000383955 105 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 RNU6-535P-201ENST00000384722 107 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 RNU2-11P-201ENST00000459191 187 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 POLR3GP1-201ENST00000594073 261 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 uc_338.11-201ENST00000619132 160 ntBASIC-1.49□□□□□ -2.65
SCAPERQ9BY12 RNU6-1317P-201ENST00000364582 104 ntBASIC-1.5□□□□□ -2.65
SCAPERQ9BY12 Y_RNA.319-201ENST00000365138 92 ntBASIC-1.5□□□□□ -2.65
SCAPERQ9BY12 AL590002.1-201ENST00000406554 418 ntBASIC-1.5□□□□□ -2.65
SCAPERQ9BY12 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC-1.5□□□□□ -2.65
SCAPERQ9BY12 UQCRBP2-201ENST00000447827 297 ntBASIC-1.5□□□□□ -2.65
SCAPERQ9BY12 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC-1.5□□□□□ -2.65
SCAPERQ9BY12 U8.19-201ENST00000459095 133 ntBASIC-1.5□□□□□ -2.65
SCAPERQ9BY12 U8.22-201ENST00000459141 133 ntBASIC-1.5□□□□□ -2.65
SCAPERQ9BY12 AC140658.3-201ENST00000567603 271 ntBASIC-1.5□□□□□ -2.65
SCAPERQ9BY12 AL158209.2-201ENST00000619266 216 ntBASIC-1.5□□□□□ -2.65
SCAPERQ9BY12 SNORD114-7-201ENST00000362520 77 ntBASIC-1.51□□□□□ -2.65
SCAPERQ9BY12 Y_RNA.472-201ENST00000384322 102 ntBASIC-1.51□□□□□ -2.65
SCAPERQ9BY12 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC-1.51□□□□□ -2.65
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms