Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.9□□□□□ -2.11
PAAF1Q9BRP4 SNORA16.1-201ENST00000364597 132 ntBASIC1.9□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.292-201ENST00000364904 97 ntBASIC1.9□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.539-201ENST00000384635 107 ntBASIC1.9□□□□□ -2.11
PAAF1Q9BRP4 AL034345.1-201ENST00000407768 123 ntBASIC1.9□□□□□ -2.11
PAAF1Q9BRP4 AC009310.1-201ENST00000414414 451 ntBASIC1.9□□□□□ -2.11
PAAF1Q9BRP4 MLLT10P1-201ENST00000418346 262 ntBASIC1.9□□□□□ -2.11
PAAF1Q9BRP4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.9□□□□□ -2.11
PAAF1Q9BRP4 RNU4-71P-201ENST00000516258 113 ntBASIC1.9□□□□□ -2.11
PAAF1Q9BRP4 RNU7-28P-201ENST00000516759 62 ntBASIC1.9□□□□□ -2.11
PAAF1Q9BRP4 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.9□□□□□ -2.11
PAAF1Q9BRP4 JPX_2.1-201ENST00000614161 69 ntBASIC1.9□□□□□ -2.11
PAAF1Q9BRP4 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.76-201ENST00000362931 109 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 SNORD68-201ENST00000363214 84 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 RNU6-379P-201ENST00000363813 104 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.203-201ENST00000364106 102 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 RNU4-41P-201ENST00000364426 143 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 RNA5SP37-201ENST00000365420 130 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.515-201ENST00000384535 112 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 RNU6-360P-201ENST00000390944 104 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 RNU6-388P-201ENST00000517012 105 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 RNU6-389P-201ENST00000517048 105 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 MIR4724-201ENST00000579485 89 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 MIR2681-201ENST00000581814 105 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.802-201ENST00000614892 130 ntBASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.89□□□□□ -2.11
PAAF1Q9BRP4 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 RNU6-414P-201ENST00000363705 104 ntBASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.552-201ENST00000384665 112 ntBASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 SNORA8.3-201ENST00000384679 139 ntBASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 RNA5SP482-201ENST00000391269 118 ntBASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 AL356379.1-201ENST00000414105 126 ntBASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 FTH1P12-201ENST00000432137 551 ntBASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 SNORD2.1-201ENST00000458762 69 ntBASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 SNORD116-28-201ENST00000516123 91 ntBASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 SNORA31.10-201ENST00000516482 106 ntBASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.714-201ENST00000517065 90 ntBASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 MIR4713-201ENST00000582691 75 ntBASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 MIR4282-201ENST00000583613 67 ntBASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.88□□□□□ -2.11
PAAF1Q9BRP4 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 MIR126-201ENST00000362291 85 ntBASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 RNU4-10P-201ENST00000364383 140 ntBASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.262-201ENST00000364641 102 ntBASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 RNU6-383P-201ENST00000410864 94 ntBASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 HMGN2P19-201ENST00000425149 265 ntBASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 HMGN1P7-201ENST00000491722 313 ntBASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 MIR4419B-201ENST00000577260 68 ntBASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 AC078938.1-201ENST00000620993 318 ntBASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 AL365265.1-201ENST00000621045 234 ntBASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
PAAF1Q9BRP4 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.86□□□□□ -2.11
PAAF1Q9BRP4 RNU6-1031P-201ENST00000384773 107 ntBASIC1.86□□□□□ -2.11
PAAF1Q9BRP4 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
PAAF1Q9BRP4 MIR676-201ENST00000390702 67 ntBASIC1.86□□□□□ -2.11
PAAF1Q9BRP4 SNRPGP10-201ENST00000432323 225 ntBASIC1.86□□□□□ -2.11
PAAF1Q9BRP4 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.86□□□□□ -2.11
PAAF1Q9BRP4 AC023449.1-201ENST00000454464 154 ntBASIC1.86□□□□□ -2.11
PAAF1Q9BRP4 RNA5SP233-201ENST00000459153 113 ntBASIC1.86□□□□□ -2.11
PAAF1Q9BRP4 AL627230.6-201ENST00000611129 280 ntBASIC1.86□□□□□ -2.11
PAAF1Q9BRP4 AL591926.4-201ENST00000616895 298 ntBASIC1.86□□□□□ -2.11
PAAF1Q9BRP4 AL359851.1-201ENST00000569460 4997 ntBASIC1.86□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.253-201ENST00000364562 112 ntBASIC1.85□□□□□ -2.11
PAAF1Q9BRP4 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
PAAF1Q9BRP4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC1.85□□□□□ -2.11
PAAF1Q9BRP4 RPL23AP91-201ENST00000569211 455 ntBASIC1.85□□□□□ -2.11
PAAF1Q9BRP4 MIR4303-201ENST00000581299 66 ntBASIC1.85□□□□□ -2.11
PAAF1Q9BRP4 AC141273.2-201ENST00000618989 130 ntBASIC1.85□□□□□ -2.11
PAAF1Q9BRP4 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
PAAF1Q9BRP4 RNU6-661P-201ENST00000362409 107 ntBASIC1.84□□□□□ -2.11
PAAF1Q9BRP4 RNU6-1084P-201ENST00000362498 107 ntBASIC1.84□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.24-201ENST00000362508 103 ntBASIC1.84□□□□□ -2.11
PAAF1Q9BRP4 RNU6-674P-201ENST00000363831 107 ntBASIC1.84□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.199-201ENST00000364014 102 ntBASIC1.84□□□□□ -2.11
PAAF1Q9BRP4 Y_RNA.308-201ENST00000365043 101 ntBASIC1.84□□□□□ -2.11
PAAF1Q9BRP4 RNU6-131P-201ENST00000391144 107 ntBASIC1.84□□□□□ -2.11
PAAF1Q9BRP4 MIR1278-201ENST00000408753 81 ntBASIC1.84□□□□□ -2.11
PAAF1Q9BRP4 MIR1298-201ENST00000408783 112 ntBASIC1.84□□□□□ -2.11
PAAF1Q9BRP4 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.84□□□□□ -2.11
PAAF1Q9BRP4 PTPRQ-208ENST00000614701 8289 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.12
PAAF1Q9BRP4 ICE2P2-201ENST00000483823 2787 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 RNU6-1209P-201ENST00000363655 107 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 Y_RNA.200-201ENST00000364018 102 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 Y_RNA.304-201ENST00000365011 112 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 RNU6-439P-201ENST00000384188 106 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 MIR526A2-201ENST00000390198 65 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 RNU6ATAC23P-201ENST00000408448 123 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 MIR1267-201ENST00000408723 78 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 Y_RNA.626-201ENST00000411288 95 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 Z98949.2-201ENST00000440996 144 ntBASIC1.83□□□□□ -2.12
PAAF1Q9BRP4 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC1.83□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 180 ms