Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 RNU1-124P-201ENST00000363861 145 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 RNU5E-4P-201ENST00000364931 120 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 RNU6-867P-201ENST00000364956 107 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 Y_RNA.336-201ENST00000365307 109 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 RNU6-910P-201ENST00000390844 107 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 MIR1285-1-201ENST00000408593 84 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 MIR1298-201ENST00000408783 112 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 RNU6-130P-201ENST00000411112 103 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.04□□□□□ -2.24
SSX3Q99909 MRPL35P3-201ENST00000421557 364 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 SNRPGP10-201ENST00000432323 225 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 POLR2KP2-201ENST00000438155 177 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 AC245047.7-201ENST00000440265 293 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 HMGN1P10-201ENST00000474557 553 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC1.04□□□□□ -2.24
SSX3Q99909 SNORD116-28-201ENST00000516123 91 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 SNORD111.1-201ENST00000516421 86 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 SNORD45.4-201ENST00000516629 73 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 AC124312.5-201ENST00000604451 268 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 SNORD113-5-201ENST00000607261 78 ntBASIC1.04□□□□□ -2.24
SSX3Q99909 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.04□□□□□ -2.24
SSX3Q99909 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.03□□□□□ -2.24
SSX3Q99909 Y_RNA.31-201ENST00000362574 102 ntBASIC1.03□□□□□ -2.24
SSX3Q99909 snoU2-30.1-201ENST00000365012 70 ntBASIC1.03□□□□□ -2.24
SSX3Q99909 Y_RNA.383-201ENST00000383855 97 ntBASIC1.03□□□□□ -2.24
SSX3Q99909 SNORA40.6-201ENST00000391153 128 ntBASIC1.03□□□□□ -2.24
SSX3Q99909 RPL23AP54-201ENST00000495129 419 ntBASIC1.03□□□□□ -2.24
SSX3Q99909 AC024405.2-202ENST00000532731 184 ntBASIC1.03□□□□□ -2.24
SSX3Q99909 C8orf59P2-201ENST00000603441 271 ntBASIC1.03□□□□□ -2.24
SSX3Q99909 AL160413.1-201ENST00000622780 310 ntBASIC1.03□□□□□ -2.24
SSX3Q99909 AC090574.1-201ENST00000623186 233 ntBASIC1.03□□□□□ -2.24
SSX3Q99909 AC091895.1-201ENST00000624494 256 ntBASIC1.03□□□□□ -2.24
SSX3Q99909 ZNF415-224ENST00000601493 2132 ntTSL 1 (best) BASIC1.03□□□□□ -2.25
SSX3Q99909 SNORA63.7-201ENST00000365579 123 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 Y_RNA.460-201ENST00000384255 102 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 MIR516B2-201ENST00000385190 85 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 MIR136-201ENST00000385207 82 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 AC004223.1-201ENST00000479840 271 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 RPS23P4-201ENST00000487908 423 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 AC117454.1-201ENST00000491120 168 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 RNU7-115P-201ENST00000516433 55 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 RNU6-1046P-201ENST00000516538 107 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 AC136932.1-201ENST00000574771 208 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC1.02□□□□□ -2.25
SSX3Q99909 MIR3660-201ENST00000584845 100 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 MIR4295-201ENST00000585286 85 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 HSPE1P19-201ENST00000603327 295 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 AP003357.1-201ENST00000604497 148 ntBASIC1.02□□□□□ -2.25
SSX3Q99909 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.02□□□□□ -2.25
SSX3Q99909 Y_RNA.203-201ENST00000364106 102 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 Y_RNA.286-201ENST00000364813 102 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 RNU6-392P-201ENST00000364926 101 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 U8.7-201ENST00000364940 136 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 RNU6-1248P-201ENST00000391096 64 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 RNU6ATAC8P-201ENST00000408460 126 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 PMCHL1-202ENST00000423102 261 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 HMGN2P32-201ENST00000444648 269 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 AC010655.3-201ENST00000478818 450 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 RNU6-397P-201ENST00000516226 104 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 Y_RNA.715-201ENST00000517082 110 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 JPX_2.1-201ENST00000614161 69 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC1.01□□□□□ -2.25
SSX3Q99909 MIR548AY-201ENST00000617669 107 ntBASIC1.01□□□□□ -2.25
SSX3Q99909 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1.01□□□□□ -2.25
SSX3Q99909 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.01□□□□□ -2.25
SSX3Q99909 Y_RNA.28-201ENST00000362554 111 ntBASIC1□□□□□ -2.25
SSX3Q99909 RNU4-80P-201ENST00000363200 141 ntBASIC1□□□□□ -2.25
SSX3Q99909 SNORD113-8-201ENST00000363497 74 ntBASIC1□□□□□ -2.25
SSX3Q99909 Y_RNA.148-201ENST00000363557 117 ntBASIC1□□□□□ -2.25
SSX3Q99909 SNORD50B-201ENST00000364995 70 ntBASIC1□□□□□ -2.25
SSX3Q99909 AC117470.1-201ENST00000381974 330 ntBASIC1□□□□□ -2.25
SSX3Q99909 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1□□□□□ -2.25
SSX3Q99909 RNU6-101P-201ENST00000410323 104 ntBASIC1□□□□□ -2.25
SSX3Q99909 Y_RNA.631-201ENST00000459607 101 ntBASIC1□□□□□ -2.25
SSX3Q99909 UBL5P1-201ENST00000507979 193 ntBASIC1□□□□□ -2.25
SSX3Q99909 RNU6-988P-201ENST00000519081 107 ntBASIC1□□□□□ -2.25
SSX3Q99909 AC127455.1-201ENST00000565496 145 ntBASIC1□□□□□ -2.25
SSX3Q99909 AL096861.1-201ENST00000610899 123 ntBASIC1□□□□□ -2.25
SSX3Q99909 MIR376A1-201ENST00000616574 68 ntBASIC1□□□□□ -2.25
SSX3Q99909 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.99□□□□□ -2.25
SSX3Q99909 Y_RNA.238-201ENST00000364441 102 ntBASIC0.99□□□□□ -2.25
SSX3Q99909 RNU6-450P-201ENST00000364654 107 ntBASIC0.99□□□□□ -2.25
SSX3Q99909 Y_RNA.389-201ENST00000383924 113 ntBASIC0.99□□□□□ -2.25
SSX3Q99909 MIR15B-201ENST00000385045 98 ntBASIC0.99□□□□□ -2.25
SSX3Q99909 RNU6-823P-201ENST00000391042 103 ntBASIC0.99□□□□□ -2.25
SSX3Q99909 Y_RNA.645-201ENST00000391229 102 ntBASIC0.99□□□□□ -2.25
SSX3Q99909 Y_RNA.721-201ENST00000517207 102 ntBASIC0.99□□□□□ -2.25
SSX3Q99909 AC090142.3-201ENST00000519012 385 ntBASIC0.99□□□□□ -2.25
SSX3Q99909 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.99□□□□□ -2.25
SSX3Q99909 MIR4300-201ENST00000581016 96 ntBASIC0.99□□□□□ -2.25
SSX3Q99909 AC007742.2-201ENST00000618226 398 ntBASIC0.99□□□□□ -2.25
SSX3Q99909 AC012676.2-201ENST00000619258 186 ntBASIC0.99□□□□□ -2.25
SSX3Q99909 Y_RNA.183-201ENST00000363882 113 ntBASIC0.98□□□□□ -2.25
SSX3Q99909 SNORD14E-201ENST00000364009 85 ntBASIC0.98□□□□□ -2.25
SSX3Q99909 RNU6-474P-201ENST00000384243 107 ntBASIC0.98□□□□□ -2.25
SSX3Q99909 SNORA80D-201ENST00000384488 135 ntBASIC0.98□□□□□ -2.25
SSX3Q99909 SNORD12-201ENST00000391002 90 ntBASIC0.98□□□□□ -2.25
SSX3Q99909 Y_RNA.602-201ENST00000410535 92 ntBASIC0.98□□□□□ -2.25
SSX3Q99909 AC063976.4-201ENST00000421971 163 ntBASIC0.98□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 164.8 ms