Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 Y_RNA.60-201ENST00000362831 98 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 RNU6-414P-201ENST00000363705 104 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 RNU6-1289P-201ENST00000384431 106 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 MTCO2P33-201ENST00000402100 465 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 AC233266.1-201ENST00000454518 96 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.47□□□□□ -2.17
USP28Q96RU2 AC090821.2-201ENST00000523552 176 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 AC024405.2-202ENST00000532731 184 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 DNAJC19P9-201ENST00000555084 351 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 AL160236.1-201ENST00000556317 195 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 AC005972.2-201ENST00000604690 348 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 AC037487.3-201ENST00000606668 112 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 AC242852.1-201ENST00000612151 96 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 MIR8054-201ENST00000620877 86 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 AC244015.1-201ENST00000622301 99 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 ZNF209P-201ENST00000593450 2304 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.47□□□□□ -2.17
USP28Q96RU2 SNORD27-201ENST00000363981 72 ntBASIC1.46□□□□□ -2.18
USP28Q96RU2 Y_RNA.447-201ENST00000384184 113 ntBASIC1.46□□□□□ -2.18
USP28Q96RU2 Y_RNA.539-201ENST00000384635 107 ntBASIC1.46□□□□□ -2.18
USP28Q96RU2 Y_RNA.556-201ENST00000384677 113 ntBASIC1.46□□□□□ -2.18
USP28Q96RU2 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC1.46□□□□□ -2.18
USP28Q96RU2 AC024067.1-201ENST00000426199 223 ntBASIC1.46□□□□□ -2.18
USP28Q96RU2 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.46□□□□□ -2.18
USP28Q96RU2 MTND4LP30-201ENST00000454092 297 ntBASIC1.46□□□□□ -2.18
USP28Q96RU2 RNU7-115P-201ENST00000516433 55 ntBASIC1.46□□□□□ -2.18
USP28Q96RU2 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.46□□□□□ -2.18
USP28Q96RU2 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.46□□□□□ -2.18
USP28Q96RU2 Y_RNA.76-201ENST00000362931 109 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 RNU4-10P-201ENST00000364383 140 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 Y_RNA.350-201ENST00000365409 98 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 RNU6-440P-201ENST00000390882 105 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 MIR1267-201ENST00000408723 78 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 MIR1278-201ENST00000408753 81 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.45□□□□□ -2.18
USP28Q96RU2 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.45□□□□□ -2.18
USP28Q96RU2 HSPE1P24-201ENST00000450782 238 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 RPL39P38-201ENST00000467018 153 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 AC099513.1-201ENST00000490423 301 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 RNU6-341P-201ENST00000516973 96 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
USP28Q96RU2 AC011604.1-201ENST00000545978 196 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 MIR3660-201ENST00000584845 100 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 AC005357.1-201ENST00000588399 301 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 POLR3GP1-201ENST00000594073 261 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 MIR548AY-201ENST00000617669 107 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 MIR7843-201ENST00000622274 79 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 AC095038.3-201ENST00000634439 195 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 U6.104-201ENST00000637979 90 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 AC100821.1-201ENST00000523153 2479 ntBASIC1.45□□□□□ -2.18
USP28Q96RU2 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.45□□□□□ -2.18
USP28Q96RU2 Y_RNA.352-201ENST00000365439 102 ntBASIC1.44□□□□□ -2.18
USP28Q96RU2 RNU6-1323P-201ENST00000384025 107 ntBASIC1.44□□□□□ -2.18
USP28Q96RU2 RNU6-211P-201ENST00000384047 107 ntBASIC1.44□□□□□ -2.18
USP28Q96RU2 MIR520G-201ENST00000385064 90 ntBASIC1.44□□□□□ -2.18
USP28Q96RU2 SNORA40.6-201ENST00000391153 128 ntBASIC1.44□□□□□ -2.18
USP28Q96RU2 RNU4-62P-201ENST00000410125 130 ntBASIC1.44□□□□□ -2.18
USP28Q96RU2 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC1.44□□□□□ -2.18
USP28Q96RU2 RPL36AP21-201ENST00000490372 323 ntBASIC1.44□□□□□ -2.18
USP28Q96RU2 SNORD116-28-201ENST00000516123 91 ntBASIC1.44□□□□□ -2.18
USP28Q96RU2 AC004817.2-201ENST00000561794 651 ntBASIC1.44□□□□□ -2.18
USP28Q96RU2 AC127455.1-201ENST00000565496 145 ntBASIC1.44□□□□□ -2.18
USP28Q96RU2 AP003357.1-201ENST00000604497 148 ntBASIC1.44□□□□□ -2.18
USP28Q96RU2 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.44□□□□□ -2.18
USP28Q96RU2 RNU4-41P-201ENST00000364426 143 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 Y_RNA.572-201ENST00000384757 98 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 RNU6-1248P-201ENST00000391096 64 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 RNU1-78P-201ENST00000391248 165 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 Y_RNA.621-201ENST00000411065 96 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 AC015922.2-201ENST00000435593 184 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 Z98949.2-201ENST00000440996 144 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 AC069257.2-201ENST00000441819 155 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 STAG3L5P-204ENST00000443759 179 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 AC245517.4-201ENST00000448601 281 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 snoU13.27-201ENST00000459278 104 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 RNU7-34P-201ENST00000459394 64 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 RPL23AP54-201ENST00000495129 419 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 RNA5SP445-201ENST00000515889 115 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 AL162424.1-201ENST00000602325 221 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 AC013791.1-201ENST00000616619 62 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.43□□□□□ -2.18
USP28Q96RU2 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.43□□□□□ -2.18
USP28Q96RU2 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.42□□□□□ -2.18
USP28Q96RU2 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
USP28Q96RU2 Y_RNA.122-201ENST00000363331 96 ntBASIC1.42□□□□□ -2.18
USP28Q96RU2 Y_RNA.269-201ENST00000364685 89 ntBASIC1.42□□□□□ -2.18
USP28Q96RU2 Y_RNA.416-201ENST00000384014 113 ntBASIC1.42□□□□□ -2.18
USP28Q96RU2 SNORA72-201ENST00000384339 132 ntBASIC1.42□□□□□ -2.18
USP28Q96RU2 SNORA36B-201ENST00000410438 131 ntBASIC1.42□□□□□ -2.18
USP28Q96RU2 RNU6-383P-201ENST00000410864 94 ntBASIC1.42□□□□□ -2.18
USP28Q96RU2 SNORD2.1-201ENST00000458762 69 ntBASIC1.42□□□□□ -2.18
USP28Q96RU2 AC104984.5-201ENST00000586878 94 ntBASIC1.42□□□□□ -2.18
USP28Q96RU2 AC011921.3-201ENST00000605540 361 ntBASIC1.42□□□□□ -2.18
USP28Q96RU2 AC021506.2-201ENST00000612354 169 ntBASIC1.42□□□□□ -2.18
USP28Q96RU2 AL078604.3-201ENST00000615580 211 ntBASIC1.42□□□□□ -2.18
USP28Q96RU2 MIR6715A-201ENST00000615929 79 ntBASIC1.42□□□□□ -2.18
USP28Q96RU2 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
USP28Q96RU2 Y_RNA.65-201ENST00000362846 100 ntBASIC1.41□□□□□ -2.18
USP28Q96RU2 Y_RNA.82-201ENST00000363000 102 ntBASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 115.7 ms