Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC091304.10-201ENST00000641554 121 ntBASIC-0.69□□□□□ -2.52
CCDC42Q96M95 Y_RNA.106-201ENST00000363189 100 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 RNU6-254P-201ENST00000363377 107 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 SNORA72-201ENST00000384339 132 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 Y_RNA.490-201ENST00000384413 102 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 MIR329-2-201ENST00000385029 84 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 MIR514A2-201ENST00000385131 88 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 MIR514A3-201ENST00000385132 88 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 RNU6-1165P-201ENST00000410119 107 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC-0.7□□□□□ -2.52
CCDC42Q96M95 AC096531.1-201ENST00000419107 107 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 SUMO1P3-201ENST00000439961 304 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC-0.7□□□□□ -2.52
CCDC42Q96M95 AC060788.1-201ENST00000521318 469 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 AL158211.1-201ENST00000566763 763 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 AC092447.9-201ENST00000603395 144 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 AC005972.2-201ENST00000604690 348 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 uc_338.22-201ENST00000622722 187 ntBASIC-0.7□□□□□ -2.52
CCDC42Q96M95 RNA5SP457-201ENST00000363657 124 ntBASIC-0.71□□□□□ -2.52
CCDC42Q96M95 RNU6-595P-201ENST00000363944 107 ntBASIC-0.71□□□□□ -2.52
CCDC42Q96M95 SNORA1.1-201ENST00000364671 133 ntBASIC-0.71□□□□□ -2.52
CCDC42Q96M95 SNORA72.3-201ENST00000365074 132 ntBASIC-0.71□□□□□ -2.52
CCDC42Q96M95 Y_RNA.540-201ENST00000384638 111 ntBASIC-0.71□□□□□ -2.52
CCDC42Q96M95 MIR518F-201ENST00000384973 87 ntBASIC-0.71□□□□□ -2.52
CCDC42Q96M95 MTND1P27-201ENST00000451117 902 ntBASIC-0.71□□□□□ -2.52
CCDC42Q96M95 RNU6-759P-201ENST00000516740 103 ntBASIC-0.71□□□□□ -2.52
CCDC42Q96M95 AC010177.1-201ENST00000547819 366 ntTSL 3 BASIC-0.71□□□□□ -2.52
CCDC42Q96M95 AC138869.1-201ENST00000568623 124 ntBASIC-0.71□□□□□ -2.52
CCDC42Q96M95 AL355297.3-201ENST00000604082 446 ntBASIC-0.71□□□□□ -2.52
CCDC42Q96M95 RNU6-268P-201ENST00000364174 107 ntBASIC-0.72□□□□□ -2.52
CCDC42Q96M95 RNU6-46P-201ENST00000383860 107 ntBASIC-0.72□□□□□ -2.52
CCDC42Q96M95 RNU6-1310P-201ENST00000384153 107 ntBASIC-0.72□□□□□ -2.52
CCDC42Q96M95 Y_RNA.517-201ENST00000384551 106 ntBASIC-0.72□□□□□ -2.52
CCDC42Q96M95 Y_RNA.533-201ENST00000384596 114 ntBASIC-0.72□□□□□ -2.52
CCDC42Q96M95 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-0.72□□□□□ -2.52
CCDC42Q96M95 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC-0.72□□□□□ -2.52
CCDC42Q96M95 MTND3P16-201ENST00000452205 344 ntBASIC-0.72□□□□□ -2.52
CCDC42Q96M95 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC-0.72□□□□□ -2.52
CCDC42Q96M95 MIR3152-201ENST00000579801 74 ntBASIC-0.72□□□□□ -2.52
CCDC42Q96M95 AC124303.1-201ENST00000605703 360 ntBASIC-0.72□□□□□ -2.52
CCDC42Q96M95 AC019193.3-201ENST00000609144 554 ntBASIC-0.72□□□□□ -2.52
CCDC42Q96M95 AP000720.1-201ENST00000625091 483 ntBASIC-0.72□□□□□ -2.52
CCDC42Q96M95 ZNF299P-201ENST00000406845 1804 ntBASIC-0.73□□□□□ -2.53
CCDC42Q96M95 Y_RNA.280-201ENST00000364765 112 ntBASIC-0.73□□□□□ -2.53
CCDC42Q96M95 RNA5SP163-201ENST00000410304 99 ntBASIC-0.73□□□□□ -2.53
CCDC42Q96M95 MCFD2P1-201ENST00000417812 300 ntBASIC-0.73□□□□□ -2.53
CCDC42Q96M95 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC-0.73□□□□□ -2.53
CCDC42Q96M95 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC-0.73□□□□□ -2.53
CCDC42Q96M95 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC-0.73□□□□□ -2.53
CCDC42Q96M95 RNU6-1232P-201ENST00000516299 86 ntBASIC-0.73□□□□□ -2.53
CCDC42Q96M95 RNU6-504P-201ENST00000516568 104 ntBASIC-0.73□□□□□ -2.53
CCDC42Q96M95 RNU6-135P-201ENST00000516769 101 ntBASIC-0.73□□□□□ -2.53
CCDC42Q96M95 RNA5SP47-201ENST00000517230 109 ntBASIC-0.73□□□□□ -2.53
CCDC42Q96M95 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC-0.73□□□□□ -2.53
CCDC42Q96M95 RNU6-522P-201ENST00000364497 107 ntBASIC-0.74□□□□□ -2.53
CCDC42Q96M95 SNORD38B-201ENST00000384690 67 ntBASIC-0.74□□□□□ -2.53
CCDC42Q96M95 MIR588-201ENST00000384900 83 ntBASIC-0.74□□□□□ -2.53
CCDC42Q96M95 MT-TH-201ENST00000387441 69 ntBASIC-0.74□□□□□ -2.53
CCDC42Q96M95 AC083904.1-201ENST00000487828 231 ntBASIC-0.74□□□□□ -2.53
CCDC42Q96M95 RNU2-12P-201ENST00000517216 168 ntBASIC-0.74□□□□□ -2.53
CCDC42Q96M95 IGLVI-20-201ENST00000519296 130 ntBASIC-0.74□□□□□ -2.53
CCDC42Q96M95 MIR3915-201ENST00000578518 97 ntBASIC-0.74□□□□□ -2.53
CCDC42Q96M95 RNY1P16-201ENST00000363063 111 ntBASIC-0.75□□□□□ -2.53
CCDC42Q96M95 SNORD114-31-201ENST00000363219 75 ntBASIC-0.75□□□□□ -2.53
CCDC42Q96M95 SNORA24-201ENST00000384096 131 ntBASIC-0.75□□□□□ -2.53
CCDC42Q96M95 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC-0.75□□□□□ -2.53
CCDC42Q96M95 MIR4645-201ENST00000583158 77 ntBASIC-0.75□□□□□ -2.53
CCDC42Q96M95 MIR3666-201ENST00000607845 111 ntBASIC-0.75□□□□□ -2.53
CCDC42Q96M95 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC-0.75□□□□□ -2.53
CCDC42Q96M95 Y_RNA.42-201ENST00000362660 108 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 Y_RNA.172-201ENST00000363765 102 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 RNU6-596P-201ENST00000365395 98 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 Y_RNA.412-201ENST00000384001 104 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 RNU5A-2P-201ENST00000384337 116 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 MT-TF-201ENST00000387314 71 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 RNU6-261P-201ENST00000459506 102 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 PRDX4P1-201ENST00000507189 574 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 RNU6-180P-201ENST00000516697 61 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 AC121247.2-201ENST00000604776 136 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 AL670379.3-201ENST00000605040 251 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 AC134878.1-201ENST00000619901 243 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 AL391262.2-201ENST00000622466 494 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 AC007494.3-201ENST00000624660 743 ntBASIC-0.76□□□□□ -2.53
CCDC42Q96M95 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC-0.77□□□□□ -2.53
CCDC42Q96M95 SNORD114-28-201ENST00000363610 72 ntBASIC-0.77□□□□□ -2.53
CCDC42Q96M95 SNORD14C-201ENST00000365382 88 ntBASIC-0.77□□□□□ -2.53
CCDC42Q96M95 MIR563-201ENST00000385080 79 ntBASIC-0.77□□□□□ -2.53
CCDC42Q96M95 MTCO1P5-201ENST00000433573 344 ntBASIC-0.77□□□□□ -2.53
CCDC42Q96M95 AC236972.2-201ENST00000434979 310 ntBASIC-0.77□□□□□ -2.53
CCDC42Q96M95 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC-0.77□□□□□ -2.53
CCDC42Q96M95 snoU13.2-201ENST00000459201 104 ntBASIC-0.77□□□□□ -2.53
CCDC42Q96M95 SNORA40.9-201ENST00000515895 93 ntBASIC-0.77□□□□□ -2.53
CCDC42Q96M95 MTND1P24-201ENST00000552175 861 ntBASIC-0.77□□□□□ -2.53
CCDC42Q96M95 MIR4273-201ENST00000582824 84 ntBASIC-0.77□□□□□ -2.53
CCDC42Q96M95 AC006380.1-201ENST00000603598 186 ntBASIC-0.77□□□□□ -2.53
CCDC42Q96M95 RNU1-29P-201ENST00000606574 126 ntBASIC-0.77□□□□□ -2.53
CCDC42Q96M95 MIR8066-201ENST00000617280 78 ntBASIC-0.77□□□□□ -2.53
CCDC42Q96M95 Y_RNA.169-201ENST00000363745 96 ntBASIC-0.78□□□□□ -2.53
CCDC42Q96M95 Y_RNA.174-201ENST00000363781 105 ntBASIC-0.78□□□□□ -2.53
Retrieved 100 of 98,524 protein–RNA pairs in 179.4 ms