Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 HMGN2P3-201ENST00000433603 273 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.53□□□□□ -2
CLIP3Q96DZ5 HMGN2P5-201ENST00000436882 273 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 ATP5J2P3-201ENST00000451550 258 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 RNU6-1146P-201ENST00000516282 102 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 RNU2-19P-201ENST00000517288 84 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 AC027419.1-201ENST00000522976 328 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 MIR4435-1-201ENST00000582552 80 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 AC005786.1-201ENST00000588553 154 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 AL929325.1-201ENST00000603096 117 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 AL049861.1-201ENST00000603130 150 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 AC097639.2-201ENST00000603159 172 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 AL353149.1-201ENST00000610667 244 ntBASIC2.53□□□□□ -2
CLIP3Q96DZ5 PCM1-222ENST00000524226 5955 ntTSL 1 (best) BASIC2.53□□□□□ -2
CLIP3Q96DZ5 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 RNU4-82P-201ENST00000362443 140 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 RNA5SP68-201ENST00000363885 119 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 MIR597-201ENST00000384968 97 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 SNORA79-201ENST00000408376 140 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 SNORD33.1-201ENST00000516213 88 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 MTND5P34-201ENST00000568888 325 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 Y_RNA.757-201ENST00000578934 114 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 MIR4635-201ENST00000583759 79 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 MIR4298-201ENST00000584380 73 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 AC108081.1-201ENST00000604358 221 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 MIR6840-201ENST00000611937 71 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 U2.20-201ENST00000613956 192 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 U6.95-201ENST00000636931 70 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 AC245060.5-201ENST00000610778 3293 ntBASIC2.52□□□□□ -2.01
CLIP3Q96DZ5 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 PRKACB-204ENST00000370685 4481 ntAPPRIS P4 TSL 1 (best) BASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 Y_RNA.91-201ENST00000363042 107 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 RNU6-508P-201ENST00000363231 103 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 Y_RNA.114-201ENST00000363265 113 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 SNORA22-201ENST00000383907 134 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 RNU6-147P-201ENST00000383983 107 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 SNORA72-201ENST00000384339 132 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 MIR1253-201ENST00000408273 105 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 Y_RNA.617-201ENST00000410920 90 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 RNA5SP450-201ENST00000411206 102 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 RNA5SP508-201ENST00000411327 119 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 MLLT10P1-201ENST00000418346 262 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 AC055731.1-201ENST00000474387 401 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 SNORD77.4-201ENST00000516158 81 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 RNU6-1041P-201ENST00000516254 102 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 Y_RNA.692-201ENST00000516627 105 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 AC131055.1-201ENST00000584626 316 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 MIR6817-201ENST00000615588 66 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 AC006435.5-201ENST00000624486 112 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 AC131280.1-202ENST00000624067 4211 ntBASIC2.51□□□□□ -2.01
CLIP3Q96DZ5 RNU6-301P-201ENST00000384277 107 ntBASIC2.5□□□□□ -2.01
CLIP3Q96DZ5 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
CLIP3Q96DZ5 SNORD11-201ENST00000459124 84 ntBASIC2.5□□□□□ -2.01
CLIP3Q96DZ5 RNU5E-3P-201ENST00000515913 68 ntBASIC2.5□□□□□ -2.01
CLIP3Q96DZ5 RNU6-1299P-201ENST00000516316 100 ntBASIC2.5□□□□□ -2.01
CLIP3Q96DZ5 RNA5SP153-201ENST00000516498 76 ntBASIC2.5□□□□□ -2.01
CLIP3Q96DZ5 RNA5SP148-201ENST00000516527 94 ntBASIC2.5□□□□□ -2.01
CLIP3Q96DZ5 RNA5SP170-201ENST00000517150 101 ntBASIC2.5□□□□□ -2.01
CLIP3Q96DZ5 MIR4679-2-201ENST00000578358 77 ntBASIC2.5□□□□□ -2.01
CLIP3Q96DZ5 AC007229.1-201ENST00000590455 412 ntBASIC2.5□□□□□ -2.01
CLIP3Q96DZ5 AC007336.1-201ENST00000576365 3828 ntBASIC2.5□□□□□ -2.01
CLIP3Q96DZ5 PIK3CA-201ENST00000263967 9093 ntAPPRIS P1 TSL 2 BASIC2.5□□□□□ -2.01
CLIP3Q96DZ5 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.49□□□□□ -2.01
CLIP3Q96DZ5 snoU2-30.2-201ENST00000362805 70 ntBASIC2.49□□□□□ -2.01
CLIP3Q96DZ5 Y_RNA.634-201ENST00000364811 113 ntBASIC2.49□□□□□ -2.01
CLIP3Q96DZ5 MIR144-201ENST00000384886 86 ntBASIC2.49□□□□□ -2.01
CLIP3Q96DZ5 RPS4XP11-201ENST00000446897 772 ntBASIC2.49□□□□□ -2.01
CLIP3Q96DZ5 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.49□□□□□ -2.01
CLIP3Q96DZ5 uc_338.4-201ENST00000616635 176 ntBASIC2.49□□□□□ -2.01
CLIP3Q96DZ5 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 MIR6073-201ENST00000352083 89 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 RNU1-22P-201ENST00000363334 158 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 RNU6-1255P-201ENST00000363434 112 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 Y_RNA.203-201ENST00000364106 102 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 Y_RNA.796-201ENST00000364268 102 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 RNU6-309P-201ENST00000364573 106 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 Y_RNA.799-201ENST00000364992 102 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 RNA5SP126-201ENST00000365092 109 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 SNORD58C-201ENST00000365223 64 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 MIRLET7F2-201ENST00000385277 83 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 AL603914.1-201ENST00000401964 204 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 HMGN2P34-201ENST00000437647 269 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 AL513328.1-201ENST00000446460 224 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 RNU6-781P-201ENST00000516377 101 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 RPL23AP91-201ENST00000569211 455 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 5S_rRNA.11-201ENST00000618635 84 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 MIR338-201ENST00000636369 67 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 MIR4679-1-201ENST00000637619 75 ntBASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 AC108866.1-201ENST00000503073 2339 ntTSL 5 BASIC2.48□□□□□ -2.01
CLIP3Q96DZ5 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.47□□□□□ -2.01
CLIP3Q96DZ5 RNU6-136P-201ENST00000384663 107 ntBASIC2.47□□□□□ -2.01
CLIP3Q96DZ5 MIR562-201ENST00000384894 95 ntBASIC2.47□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 168 ms