Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 RNU6-1335P-201ENST00000365426 107 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 RNU6-716P-201ENST00000365621 103 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 SNORD78.2-201ENST00000391076 69 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 SNORD99-201ENST00000408612 74 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 RNU2-61P-201ENST00000411069 191 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 Y_RNA.635-201ENST00000459041 101 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 AC069439.1-201ENST00000494739 167 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 RNU6-358P-201ENST00000516564 75 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 AP003716.2-201ENST00000528260 108 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 MIR4711-201ENST00000578274 70 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 AC005972.2-201ENST00000604690 348 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 AL136317.1-201ENST00000612653 226 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 AL109933.3-201ENST00000619095 188 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 MIR5087-201ENST00000635826 76 ntBASIC0.68□□□□□ -2.3
HDDC3Q8N4P3 RNU6-767P-201ENST00000384132 107 ntBASIC0.67□□□□□ -2.3
HDDC3Q8N4P3 Y_RNA.605-201ENST00000410577 105 ntBASIC0.67□□□□□ -2.3
HDDC3Q8N4P3 SNORD123-201ENST00000459473 70 ntBASIC0.67□□□□□ -2.3
HDDC3Q8N4P3 SNORA25.10-201ENST00000515926 124 ntBASIC0.67□□□□□ -2.3
HDDC3Q8N4P3 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.67□□□□□ -2.3
HDDC3Q8N4P3 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.66□□□□□ -2.3
HDDC3Q8N4P3 Y_RNA.68-201ENST00000362881 102 ntBASIC0.66□□□□□ -2.3
HDDC3Q8N4P3 RNU6-20P-201ENST00000384106 107 ntBASIC0.66□□□□□ -2.3
HDDC3Q8N4P3 SNORA72-201ENST00000384339 132 ntBASIC0.66□□□□□ -2.3
HDDC3Q8N4P3 SNRPGP10-201ENST00000432323 225 ntBASIC0.66□□□□□ -2.3
HDDC3Q8N4P3 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.66□□□□□ -2.3
HDDC3Q8N4P3 RNU7-169P-201ENST00000459456 61 ntBASIC0.66□□□□□ -2.3
HDDC3Q8N4P3 RN7SKP164-201ENST00000516138 266 ntBASIC0.66□□□□□ -2.3
HDDC3Q8N4P3 MTND4LP26-201ENST00000518144 282 ntBASIC0.66□□□□□ -2.3
HDDC3Q8N4P3 RNU6-94P-201ENST00000607728 107 ntBASIC0.66□□□□□ -2.3
HDDC3Q8N4P3 AC093783.1-201ENST00000612976 329 ntBASIC0.66□□□□□ -2.3
HDDC3Q8N4P3 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.66□□□□□ -2.3
HDDC3Q8N4P3 Y_RNA.172-201ENST00000363765 102 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 Y_RNA.258-201ENST00000364613 105 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 Y_RNA.446-201ENST00000384178 104 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 RNY3P4-201ENST00000384428 101 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 MIR628-201ENST00000385229 95 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 RNU6-370P-201ENST00000411008 104 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 AL358176.2-201ENST00000425769 204 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 HMGN1P33-201ENST00000432945 451 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 MTND4P17-201ENST00000470444 350 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 RNU6-120P-201ENST00000516077 103 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 RNU6-1110P-201ENST00000516462 101 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 AC084782.3-201ENST00000612282 578 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 WT1-AS_8.1-201ENST00000615200 275 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 AC098679.4-201ENST00000624241 654 ntBASIC0.65□□□□□ -2.31
HDDC3Q8N4P3 MIR330-201ENST00000362196 94 ntBASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 RNU6-626P-201ENST00000363354 107 ntBASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 SNORD14E-201ENST00000364009 85 ntBASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 SNORA75.6-201ENST00000391318 127 ntBASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 RNA5SP193-201ENST00000410353 107 ntBASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 RNA5SP127-201ENST00000411051 133 ntBASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 MTND5P15-201ENST00000434246 349 ntBASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 RNU6-496P-201ENST00000516145 99 ntBASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 Y_RNA.681-201ENST00000516445 113 ntBASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 RNA5SP121-201ENST00000516537 101 ntBASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 RNU11-2P-201ENST00000516898 142 ntBASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 AC091925.1-201ENST00000623204 462 ntBASIC0.64□□□□□ -2.31
HDDC3Q8N4P3 RNA5SP257-201ENST00000363023 116 ntBASIC0.63□□□□□ -2.31
HDDC3Q8N4P3 SNORD50B-201ENST00000364995 70 ntBASIC0.63□□□□□ -2.31
HDDC3Q8N4P3 MIR802-201ENST00000390235 94 ntBASIC0.63□□□□□ -2.31
HDDC3Q8N4P3 RNU6-192P-201ENST00000391253 100 ntBASIC0.63□□□□□ -2.31
HDDC3Q8N4P3 SNORD111-201ENST00000408139 94 ntBASIC0.63□□□□□ -2.31
HDDC3Q8N4P3 RNU6-855P-201ENST00000410395 104 ntBASIC0.63□□□□□ -2.31
HDDC3Q8N4P3 Y_RNA.646-201ENST00000410980 101 ntBASIC0.63□□□□□ -2.31
HDDC3Q8N4P3 MIR5690-201ENST00000583739 73 ntBASIC0.63□□□□□ -2.31
HDDC3Q8N4P3 MIR4251-201ENST00000635819 61 ntBASIC0.63□□□□□ -2.31
HDDC3Q8N4P3 C18orf54-201ENST00000300091 5237 ntAPPRIS P1 TSL 1 (best) BASIC0.62□□□□□ -2.31
HDDC3Q8N4P3 RNU6-710P-201ENST00000410424 105 ntBASIC0.62□□□□□ -2.31
HDDC3Q8N4P3 RNU6-733P-201ENST00000410759 104 ntBASIC0.62□□□□□ -2.31
HDDC3Q8N4P3 FCF1P9-201ENST00000412546 282 ntBASIC0.62□□□□□ -2.31
HDDC3Q8N4P3 MTND1P4-201ENST00000435196 415 ntBASIC0.62□□□□□ -2.31
HDDC3Q8N4P3 RPL30P15-201ENST00000457129 321 ntBASIC0.62□□□□□ -2.31
HDDC3Q8N4P3 RNU6-436P-201ENST00000516171 114 ntBASIC0.62□□□□□ -2.31
HDDC3Q8N4P3 AC036111.3-201ENST00000526389 112 ntBASIC0.62□□□□□ -2.31
HDDC3Q8N4P3 AL512605.2-201ENST00000592972 256 ntBASIC0.62□□□□□ -2.31
HDDC3Q8N4P3 AC011476.5-201ENST00000615594 130 ntBASIC0.62□□□□□ -2.31
HDDC3Q8N4P3 AC134026.1-201ENST00000623249 2239 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 AC068700.1-201ENST00000565862 3754 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 SNORD38C-201ENST00000384381 69 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 RNU6-310P-201ENST00000384655 107 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 RNU6-1067P-201ENST00000384752 107 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 RNU4-14P-201ENST00000410858 122 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 RNU6-1304P-201ENST00000411374 106 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 MTND1P2-201ENST00000430604 821 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 Y_RNA.655-201ENST00000515919 96 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 RNU4-54P-201ENST00000516428 129 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 RNU6-229P-201ENST00000516614 102 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 MIR4659A-201ENST00000580269 81 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 MIR4300-201ENST00000581016 96 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 Z83818.1-201ENST00000603584 150 ntBASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.61□□□□□ -2.31
HDDC3Q8N4P3 Y_RNA.160-201ENST00000363677 92 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 RNY3P11-201ENST00000364153 102 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 Y_RNA.230-201ENST00000364348 109 ntBASIC0.6□□□□□ -2.31
HDDC3Q8N4P3 RNU4-40P-201ENST00000364351 143 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 135.3 ms