Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 Y_RNA.224-201ENST00000364308 111 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 RNU6-654P-201ENST00000364373 107 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 MIR499A-201ENST00000384903 122 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 MIR1302-7-201ENST00000408841 72 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 Y_RNA.653-201ENST00000459091 95 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 RNU6-1110P-201ENST00000516462 101 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 Y_RNA.714-201ENST00000517065 90 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 RN7SKP295-201ENST00000517264 153 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 AC004812.1-201ENST00000540773 146 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 RBM11P1-201ENST00000604951 799 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 AC022306.2-201ENST00000617563 647 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 AC008133.2-201ENST00000624540 351 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 AL442644.1-201ENST00000454390 3105 ntBASIC0.55□□□□□ -2.32
NUDCD3Q8IVD9 SAMD9-203ENST00000620985 6754 ntAPPRIS P1 TSL 2 BASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 Y_RNA.148-201ENST00000363557 117 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 RNU6-1175P-201ENST00000365200 107 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 Y_RNA.474-201ENST00000384341 102 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 MIR559-201ENST00000385188 96 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 RNU6ATAC3P-201ENST00000387974 126 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 SNORD28B-201ENST00000390993 75 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 MTCO2P27-201ENST00000420740 428 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 AL392103.1-201ENST00000447000 198 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 AL157398.1-201ENST00000452981 186 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 AC067940.1-201ENST00000458411 300 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 AC098869.1-201ENST00000481627 292 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 RNU6-559P-201ENST00000516151 98 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 RNU11-2P-201ENST00000516898 142 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 MIR6516-201ENST00000630554 81 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 MIR4251-201ENST00000635819 61 ntBASIC0.54□□□□□ -2.32
NUDCD3Q8IVD9 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 ZBTB41-201ENST00000367405 8478 ntAPPRIS P1 TSL 1 (best) BASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 Y_RNA.27-201ENST00000362540 103 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 SNORD14E-201ENST00000364009 85 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 Y_RNA.248-201ENST00000364501 109 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 RNU6-1323P-201ENST00000384025 107 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 Y_RNA.570-201ENST00000384750 101 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 SNORD111-201ENST00000408139 94 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 MIR548J-201ENST00000408833 112 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 RNU6-994P-201ENST00000410507 111 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 Y_RNA.676-201ENST00000516393 96 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 RNU4-54P-201ENST00000516428 129 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 RNU6-911P-201ENST00000516523 104 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 AC093027.1-201ENST00000546698 429 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 MIR548AR-201ENST00000582191 57 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 MIR6788-201ENST00000618842 66 ntBASIC0.53□□□□□ -2.32
NUDCD3Q8IVD9 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
NUDCD3Q8IVD9 Y_RNA.310-201ENST00000365063 113 ntBASIC0.52□□□□□ -2.33
NUDCD3Q8IVD9 Y_RNA.341-201ENST00000365341 102 ntBASIC0.52□□□□□ -2.33
NUDCD3Q8IVD9 AL590004.1-201ENST00000405321 300 ntBASIC0.52□□□□□ -2.33
NUDCD3Q8IVD9 RNA5SP95-201ENST00000410319 137 ntBASIC0.52□□□□□ -2.33
NUDCD3Q8IVD9 RNU6-710P-201ENST00000410424 105 ntBASIC0.52□□□□□ -2.33
NUDCD3Q8IVD9 AC005042.3-201ENST00000453230 174 ntBASIC0.52□□□□□ -2.33
NUDCD3Q8IVD9 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.52□□□□□ -2.33
NUDCD3Q8IVD9 MIR4714-201ENST00000580728 77 ntBASIC0.52□□□□□ -2.33
NUDCD3Q8IVD9 MIR151B-201ENST00000584249 96 ntBASIC0.52□□□□□ -2.33
NUDCD3Q8IVD9 POLR3GP1-201ENST00000594073 261 ntBASIC0.52□□□□□ -2.33
NUDCD3Q8IVD9 AC113139.1-201ENST00000605049 239 ntBASIC0.52□□□□□ -2.33
NUDCD3Q8IVD9 Y_RNA.203-201ENST00000364106 102 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 SNORD113.3-201ENST00000364630 78 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 AC099799.1-201ENST00000439809 192 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 AC091951.2-201ENST00000500762 203 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 RNU7-116P-201ENST00000516940 62 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 RNU6-699P-201ENST00000517081 110 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 AC024405.2-202ENST00000532731 184 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 AL078603.1-201ENST00000603824 313 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 AC133104.2-201ENST00000615272 193 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 U6atac.1-201ENST00000616025 117 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 AC139792.2-201ENST00000624218 587 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 MTND4LP32-201ENST00000636111 270 ntBASIC0.51□□□□□ -2.33
NUDCD3Q8IVD9 RNU6-490P-201ENST00000362985 107 ntBASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 SNORD38C-201ENST00000384381 69 ntBASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 MIR570-201ENST00000384917 97 ntBASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 AC244098.3-201ENST00000424803 96 ntBASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 RNA5SP121-201ENST00000516537 101 ntBASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 AC006600.1-201ENST00000572529 153 ntBASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 MIR4423-201ENST00000580922 80 ntBASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 AC005730.3-201ENST00000583067 366 ntBASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 AC012433.1-201ENST00000588916 398 ntBASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 DEFB117-201ENST00000602356 141 ntBASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 AL136317.1-201ENST00000612653 226 ntBASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 AC092794.1-201ENST00000612734 582 ntBASIC0.5□□□□□ -2.33
NUDCD3Q8IVD9 SNORD18A-201ENST00000363753 72 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 Y_RNA.331-201ENST00000365267 102 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 Y_RNA.456-201ENST00000384232 111 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 SNORA2B-201ENST00000384583 137 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 RNU6-1067P-201ENST00000384752 107 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 RNU1-119P-201ENST00000391122 165 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 MIR1827-201ENST00000408549 66 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 RNU6ATAC33P-201ENST00000408647 126 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 AF228730.4-201ENST00000421457 183 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 AC005534.2-201ENST00000431047 433 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 RPL23AP54-201ENST00000495129 419 ntBASIC0.49□□□□□ -2.33
NUDCD3Q8IVD9 AC011195.1-201ENST00000578177 177 ntBASIC0.49□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 170.2 ms