Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 Y_RNA.570-201ENST00000384750 101 ntBASIC0.67□□□□□ -2.3
NIPAL3Q6P499 SNORD89-201ENST00000390981 114 ntBASIC0.67□□□□□ -2.3
NIPAL3Q6P499 AC024067.1-201ENST00000426199 223 ntBASIC0.67□□□□□ -2.3
NIPAL3Q6P499 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.67□□□□□ -2.3
NIPAL3Q6P499 AC067940.1-201ENST00000458411 300 ntBASIC0.67□□□□□ -2.3
NIPAL3Q6P499 U7.7-201ENST00000459276 60 ntBASIC0.67□□□□□ -2.3
NIPAL3Q6P499 RN7SKP164-201ENST00000516138 266 ntBASIC0.67□□□□□ -2.3
NIPAL3Q6P499 AC093027.1-201ENST00000546698 429 ntBASIC0.67□□□□□ -2.3
NIPAL3Q6P499 AC025627.3-201ENST00000582078 182 ntBASIC0.67□□□□□ -2.3
NIPAL3Q6P499 MIR4452-201ENST00000583004 71 ntBASIC0.67□□□□□ -2.3
NIPAL3Q6P499 POLR3GP1-201ENST00000594073 261 ntBASIC0.67□□□□□ -2.3
NIPAL3Q6P499 MTND4LP32-201ENST00000636111 270 ntBASIC0.67□□□□□ -2.3
NIPAL3Q6P499 SNORD38C-201ENST00000384381 69 ntBASIC0.66□□□□□ -2.3
NIPAL3Q6P499 MIR802-201ENST00000390235 94 ntBASIC0.66□□□□□ -2.3
NIPAL3Q6P499 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.66□□□□□ -2.3
NIPAL3Q6P499 AC004941.2-201ENST00000427009 228 ntBASIC0.66□□□□□ -2.3
NIPAL3Q6P499 RPS29P1-201ENST00000465274 159 ntBASIC0.66□□□□□ -2.3
NIPAL3Q6P499 AC113410.1-201ENST00000505029 247 ntBASIC0.66□□□□□ -2.3
NIPAL3Q6P499 Y_RNA.676-201ENST00000516393 96 ntBASIC0.66□□□□□ -2.3
NIPAL3Q6P499 RNU11-2P-201ENST00000516898 142 ntBASIC0.66□□□□□ -2.3
NIPAL3Q6P499 JPX_2.1-201ENST00000614161 69 ntBASIC0.66□□□□□ -2.3
NIPAL3Q6P499 7SK.10-201ENST00000621414 298 ntBASIC0.66□□□□□ -2.3
NIPAL3Q6P499 Y_RNA.331-201ENST00000365267 102 ntBASIC0.65□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.384-201ENST00000383909 102 ntBASIC0.65□□□□□ -2.31
NIPAL3Q6P499 RNU6-1040P-201ENST00000383974 107 ntBASIC0.65□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.428-201ENST00000384078 102 ntBASIC0.65□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.456-201ENST00000384232 111 ntBASIC0.65□□□□□ -2.31
NIPAL3Q6P499 RNU6-110P-201ENST00000384508 104 ntBASIC0.65□□□□□ -2.31
NIPAL3Q6P499 RNY4P36-201ENST00000391116 96 ntBASIC0.65□□□□□ -2.31
NIPAL3Q6P499 RNU6-994P-201ENST00000410507 111 ntBASIC0.65□□□□□ -2.31
NIPAL3Q6P499 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.65□□□□□ -2.31
NIPAL3Q6P499 AC005730.3-201ENST00000583067 366 ntBASIC0.65□□□□□ -2.31
NIPAL3Q6P499 AL355073.2-201ENST00000612106 557 ntBASIC0.65□□□□□ -2.31
NIPAL3Q6P499 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.65□□□□□ -2.31
NIPAL3Q6P499 AC008133.2-201ENST00000624540 351 ntBASIC0.65□□□□□ -2.31
NIPAL3Q6P499 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.65□□□□□ -2.31
NIPAL3Q6P499 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.65□□□□□ -2.31
NIPAL3Q6P499 CCDC73-201ENST00000335185 3849 ntAPPRIS P2 TSL 2 BASIC0.64□□□□□ -2.31
NIPAL3Q6P499 AC134026.1-201ENST00000623249 2239 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 HSBP1P2-201ENST00000299671 229 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.148-201ENST00000363557 117 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.203-201ENST00000364106 102 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.310-201ENST00000365063 113 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 RNU6-1335P-201ENST00000365426 107 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 MIR499A-201ENST00000384903 122 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 SNORD111-201ENST00000408139 94 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 MTND5P15-201ENST00000434246 349 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.64□□□□□ -2.31
NIPAL3Q6P499 SNORA20.3-201ENST00000516880 132 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 SNORD116.3-201ENST00000517176 78 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC0.64□□□□□ -2.31
NIPAL3Q6P499 AC087685.1-201ENST00000587507 141 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.772-201ENST00000606692 102 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 AL136317.1-201ENST00000612653 226 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 MIR6835-201ENST00000621552 64 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 MIR4251-201ENST00000635819 61 ntBASIC0.64□□□□□ -2.31
NIPAL3Q6P499 RNU6-442P-201ENST00000383968 104 ntBASIC0.63□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.505-201ENST00000384489 102 ntBASIC0.63□□□□□ -2.31
NIPAL3Q6P499 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.63□□□□□ -2.31
NIPAL3Q6P499 SNORD99-201ENST00000408612 74 ntBASIC0.63□□□□□ -2.31
NIPAL3Q6P499 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.63□□□□□ -2.31
NIPAL3Q6P499 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.63□□□□□ -2.31
NIPAL3Q6P499 AC117454.1-201ENST00000491120 168 ntBASIC0.63□□□□□ -2.31
NIPAL3Q6P499 RPL23AP54-201ENST00000495129 419 ntBASIC0.63□□□□□ -2.31
NIPAL3Q6P499 RNU6-1110P-201ENST00000516462 101 ntBASIC0.63□□□□□ -2.31
NIPAL3Q6P499 DEFB108E-201ENST00000524692 240 ntBASIC0.63□□□□□ -2.31
NIPAL3Q6P499 AC036111.3-201ENST00000526389 112 ntBASIC0.63□□□□□ -2.31
NIPAL3Q6P499 AC024405.2-202ENST00000532731 184 ntBASIC0.63□□□□□ -2.31
NIPAL3Q6P499 RNU6-94P-201ENST00000607728 107 ntBASIC0.63□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.142-201ENST00000363491 102 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.224-201ENST00000364308 111 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.462-201ENST00000384268 102 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 SNORD116-29-201ENST00000384516 83 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 RNU6-1067P-201ENST00000384752 107 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 AL590004.1-201ENST00000405321 300 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 AC138393.2-201ENST00000414742 246 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 AC005534.2-201ENST00000431047 433 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 COX6CP6-201ENST00000490840 228 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 AC091951.2-201ENST00000500762 203 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 RNU7-110P-201ENST00000516891 62 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.718-201ENST00000517110 102 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 CYP3A137P-201ENST00000562436 69 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 MIR4423-201ENST00000580922 80 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 MIR548AR-201ENST00000582191 57 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 DEFB117-201ENST00000602356 141 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 AP003357.1-201ENST00000604497 148 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 AC010205.1-201ENST00000616668 449 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 MIR4272-201ENST00000635924 64 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 MIR1302-1-201ENST00000637932 143 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 AC099654.14-201ENST00000638599 341 ntBASIC0.62□□□□□ -2.31
NIPAL3Q6P499 SNORD113.3-201ENST00000364630 78 ntBASIC0.61□□□□□ -2.31
NIPAL3Q6P499 MIR508-201ENST00000384857 115 ntBASIC0.61□□□□□ -2.31
NIPAL3Q6P499 AC133485.1-201ENST00000567176 124 ntBASIC0.61□□□□□ -2.31
NIPAL3Q6P499 AC138907.6-201ENST00000568401 126 ntBASIC0.61□□□□□ -2.31
NIPAL3Q6P499 RPS29P30-201ENST00000600975 111 ntBASIC0.61□□□□□ -2.31
NIPAL3Q6P499 AL590095.2-201ENST00000604136 117 ntBASIC0.61□□□□□ -2.31
NIPAL3Q6P499 AC011373.1-201ENST00000607270 237 ntBASIC0.61□□□□□ -2.31
NIPAL3Q6P499 AC084781.2-201ENST00000615568 161 ntBASIC0.61□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.370-201ENST00000365589 108 ntBASIC0.6□□□□□ -2.31
NIPAL3Q6P499 Y_RNA.463-201ENST00000384271 102 ntBASIC0.6□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 106.2 ms