Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.63□□□□□ -2.15
USP41Q3LFD5 AL391987.6-201ENST00000305671 199 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
USP41Q3LFD5 RNU6-801P-201ENST00000364087 105 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 Y_RNA.237-201ENST00000364439 102 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 SNORA72.4-201ENST00000384174 132 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 RNU6-662P-201ENST00000384253 104 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 Y_RNA.483-201ENST00000384380 101 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 MT-TW-201ENST00000387382 68 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 MTCO2P33-201ENST00000402100 465 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 MIR1323-201ENST00000408090 73 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 RNU2-14P-201ENST00000411053 191 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 AC004965.1-201ENST00000413033 213 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 AC104332.1-201ENST00000440471 797 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 RNU7-141P-201ENST00000459304 62 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 RPL23AP54-201ENST00000495129 419 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 SERF1AP1-201ENST00000514575 187 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 RNU7-28P-201ENST00000516759 62 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 RNU7-116P-201ENST00000516940 62 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 AC024405.2-202ENST00000532731 184 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 AL161670.1-201ENST00000554348 137 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 SNORA77B-201ENST00000578179 125 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.62□□□□□ -2.15
USP41Q3LFD5 AC073349.3-201ENST00000617616 186 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 MIR548AY-201ENST00000617669 107 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 MIR8063-201ENST00000621930 81 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 ZNF209P-201ENST00000593450 2304 ntBASIC1.62□□□□□ -2.15
USP41Q3LFD5 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
USP41Q3LFD5 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
USP41Q3LFD5 SNORD68-201ENST00000363214 84 ntBASIC1.61□□□□□ -2.15
USP41Q3LFD5 RNU4-41P-201ENST00000364426 143 ntBASIC1.61□□□□□ -2.15
USP41Q3LFD5 RNU6-763P-201ENST00000390865 106 ntBASIC1.61□□□□□ -2.15
USP41Q3LFD5 SNORA26.5-201ENST00000391215 123 ntBASIC1.61□□□□□ -2.15
USP41Q3LFD5 RNA5SP482-201ENST00000391269 118 ntBASIC1.61□□□□□ -2.15
USP41Q3LFD5 MTCO2P24-201ENST00000515611 426 ntBASIC1.61□□□□□ -2.15
USP41Q3LFD5 RNU7-115P-201ENST00000516433 55 ntBASIC1.61□□□□□ -2.15
USP41Q3LFD5 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC1.61□□□□□ -2.15
USP41Q3LFD5 AP003357.1-201ENST00000604497 148 ntBASIC1.61□□□□□ -2.15
USP41Q3LFD5 AP001282.2-201ENST00000616149 309 ntBASIC1.61□□□□□ -2.15
USP41Q3LFD5 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.61□□□□□ -2.15
USP41Q3LFD5 ICE2P2-201ENST00000483823 2787 ntBASIC1.61□□□□□ -2.15
USP41Q3LFD5 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.6□□□□□ -2.15
USP41Q3LFD5 Y_RNA.133-201ENST00000363428 110 ntBASIC1.6□□□□□ -2.15
USP41Q3LFD5 SNORA7.1-201ENST00000363750 139 ntBASIC1.6□□□□□ -2.15
USP41Q3LFD5 Y_RNA.226-201ENST00000364337 114 ntBASIC1.6□□□□□ -2.15
USP41Q3LFD5 Y_RNA.396-201ENST00000383949 103 ntBASIC1.6□□□□□ -2.15
USP41Q3LFD5 RNU6-997P-201ENST00000384725 107 ntBASIC1.6□□□□□ -2.15
USP41Q3LFD5 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.6□□□□□ -2.15
USP41Q3LFD5 CALM2P4-201ENST00000430810 426 ntBASIC1.6□□□□□ -2.15
USP41Q3LFD5 PGBD4P5-201ENST00000445958 426 ntBASIC1.6□□□□□ -2.15
USP41Q3LFD5 HSPE1P24-201ENST00000450782 238 ntBASIC1.6□□□□□ -2.15
USP41Q3LFD5 OR9P1P-201ENST00000496431 281 ntBASIC1.6□□□□□ -2.15
USP41Q3LFD5 RNU1-92P-201ENST00000517017 135 ntBASIC1.6□□□□□ -2.15
USP41Q3LFD5 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.6□□□□□ -2.15
USP41Q3LFD5 AL591926.4-201ENST00000616895 298 ntBASIC1.6□□□□□ -2.15
USP41Q3LFD5 MIR194-1-201ENST00000384892 85 ntBASIC1.59□□□□□ -2.15
USP41Q3LFD5 MTCYBP9-201ENST00000431021 303 ntBASIC1.59□□□□□ -2.15
USP41Q3LFD5 Z98949.2-201ENST00000440996 144 ntBASIC1.59□□□□□ -2.15
USP41Q3LFD5 RNA5SP168-201ENST00000516642 112 ntBASIC1.59□□□□□ -2.15
USP41Q3LFD5 SNORA27.4-201ENST00000516650 95 ntBASIC1.59□□□□□ -2.15
USP41Q3LFD5 AC127455.1-201ENST00000565496 145 ntBASIC1.59□□□□□ -2.15
USP41Q3LFD5 MIR4421-201ENST00000578133 69 ntBASIC1.59□□□□□ -2.15
USP41Q3LFD5 SNORD3E-202ENST00000627253 216 ntBASIC1.59□□□□□ -2.15
USP41Q3LFD5 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.58□□□□□ -2.16
USP41Q3LFD5 WWP1P1-201ENST00000466609 2769 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 MIR126-201ENST00000362291 85 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 RNU6-1123P-201ENST00000362347 106 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 RNU6-899P-201ENST00000363947 107 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 Y_RNA.327-201ENST00000365201 102 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 RNA5SP259-201ENST00000365541 109 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 RNU6-338P-201ENST00000383888 105 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 RNU6-472P-201ENST00000384299 107 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 U8.16-201ENST00000391279 133 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 MIR1302-3-201ENST00000408128 138 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 MIR1304-201ENST00000408243 91 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 SNORA36B-201ENST00000410438 131 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 AL161935.2-201ENST00000414627 60 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 MLLT10P1-201ENST00000418346 262 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.58□□□□□ -2.16
USP41Q3LFD5 BTF3P11-201ENST00000426582 477 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 AL354695.1-201ENST00000427935 228 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 U8.19-201ENST00000459095 133 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 Y_RNA.637-201ENST00000459424 114 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 SUMO2P16-201ENST00000519475 264 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 MIR4778-201ENST00000577635 80 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 MIR4285-201ENST00000581001 85 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 AL513423.1-201ENST00000621695 132 ntBASIC1.58□□□□□ -2.16
USP41Q3LFD5 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.58□□□□□ -2.16
USP41Q3LFD5 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.58□□□□□ -2.16
USP41Q3LFD5 RNU6-1272P-201ENST00000362776 107 ntBASIC1.57□□□□□ -2.16
USP41Q3LFD5 RNU6-424P-201ENST00000384367 105 ntBASIC1.57□□□□□ -2.16
USP41Q3LFD5 MIR568-201ENST00000385036 95 ntBASIC1.57□□□□□ -2.16
USP41Q3LFD5 MIR513A1-201ENST00000385138 129 ntBASIC1.57□□□□□ -2.16
USP41Q3LFD5 MTND3P2-201ENST00000438452 342 ntBASIC1.57□□□□□ -2.16
USP41Q3LFD5 Y_RNA.673-201ENST00000516306 88 ntBASIC1.57□□□□□ -2.16
USP41Q3LFD5 RNU6-1116P-201ENST00000517269 99 ntBASIC1.57□□□□□ -2.16
USP41Q3LFD5 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.57□□□□□ -2.16
USP41Q3LFD5 MIR8070-201ENST00000616510 88 ntBASIC1.57□□□□□ -2.16
USP41Q3LFD5 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 135.6 ms