Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNU6-1156P-201ENST00000410365 100 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 RNU6-1199P-201ENST00000411249 104 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 AC114737.2-201ENST00000421583 173 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 FCF1P4-201ENST00000448326 183 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 RPL30P15-201ENST00000457129 321 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 SNORD123-201ENST00000459473 70 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC0.4□□□□□ -2.35
FOXA1P55317 RNU4-57P-201ENST00000515980 135 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 RNU7-43P-201ENST00000516554 64 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 RNU6-358P-201ENST00000516564 75 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 RNU6-1012P-201ENST00000516606 109 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 AC022616.4-201ENST00000522985 181 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC0.4□□□□□ -2.35
FOXA1P55317 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC0.4□□□□□ -2.35
FOXA1P55317 AC005176.2-201ENST00000596933 147 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 RNU6-94P-201ENST00000607728 107 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 AC084782.3-201ENST00000612282 578 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 AC008133.2-201ENST00000624540 351 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 AC073869.6-201ENST00000640656 341 ntBASIC0.4□□□□□ -2.35
FOXA1P55317 Y_RNA.6-201ENST00000362350 114 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 SNORD50B-201ENST00000364995 70 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 snoU2-30.1-201ENST00000365012 70 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 RNU6-20P-201ENST00000384106 107 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 RNU6-131P-201ENST00000391144 107 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC0.39□□□□□ -2.35
FOXA1P55317 CHEK2P4-201ENST00000450340 246 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC0.39□□□□□ -2.35
FOXA1P55317 MTND4P17-201ENST00000470444 350 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 AC098869.1-201ENST00000481627 292 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.39□□□□□ -2.35
FOXA1P55317 RNU6-436P-201ENST00000516171 114 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 RNU6-155P-201ENST00000516347 100 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 RNU6-966P-201ENST00000516479 104 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 AC036111.3-201ENST00000526389 112 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 Z83818.1-201ENST00000603584 150 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 AC005972.2-201ENST00000604690 348 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 AL136317.1-201ENST00000612653 226 ntBASIC0.39□□□□□ -2.35
FOXA1P55317 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.39□□□□□ -2.35
FOXA1P55317 Y_RNA.258-201ENST00000364613 105 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 Y_RNA.446-201ENST00000384178 104 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 SNORA72-201ENST00000384339 132 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 RNY3P4-201ENST00000384428 101 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
FOXA1P55317 RNU6-994P-201ENST00000410507 111 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC0.38□□□□□ -2.35
FOXA1P55317 SNRPGP10-201ENST00000432323 225 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 RNU7-169P-201ENST00000459456 61 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 RNU6-1110P-201ENST00000516462 101 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 RNA5SP330-201ENST00000517096 96 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 RNU6-264P-201ENST00000517134 104 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 AC011476.5-201ENST00000615594 130 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 KCNQ1OT1_3.1-201ENST00000616504 116 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 MIR924-201ENST00000638017 53 ntBASIC0.38□□□□□ -2.35
FOXA1P55317 AC134026.1-201ENST00000623249 2239 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 RNU6-626P-201ENST00000363354 107 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 RNY3P11-201ENST00000364153 102 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 RNU4-40P-201ENST00000364351 143 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 RNU6-654P-201ENST00000364373 107 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 RNU6-767P-201ENST00000384132 107 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 RNU6-310P-201ENST00000384655 107 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 SNORD78.2-201ENST00000391076 69 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 SNORA75.6-201ENST00000391318 127 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 SNORD111-201ENST00000408139 94 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 MIR1302-7-201ENST00000408841 72 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 Y_RNA.646-201ENST00000410980 101 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 RNU6-1304P-201ENST00000411374 106 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 AL358176.2-201ENST00000425769 204 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 HMGN2P32-201ENST00000444648 269 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 AL392103.1-201ENST00000447000 198 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 RNU4-54P-201ENST00000516428 129 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 RNU11-2P-201ENST00000516898 142 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 AC093027.1-201ENST00000546698 429 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 AC098679.4-201ENST00000624241 654 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 MIR5087-201ENST00000635826 76 ntBASIC0.37□□□□□ -2.35
FOXA1P55317 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.37□□□□□ -2.35
FOXA1P55317 Y_RNA.146-201ENST00000363549 102 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 RNA5SP457-201ENST00000363657 124 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 Y_RNA.368-201ENST00000365547 113 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 RNU6-370P-201ENST00000411008 104 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 MTND1P34-201ENST00000438556 671 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 Y_RNA.635-201ENST00000459041 101 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 U8.19-201ENST00000459095 133 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.36□□□□□ -2.35
FOXA1P55317 PRDX4P1-201ENST00000507189 574 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 Y_RNA.691-201ENST00000516611 103 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 RNU7-4P-201ENST00000516961 62 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 AC144568.1-201ENST00000520139 137 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 AC091925.1-201ENST00000623204 462 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 G3BP1-214ENST00000627077 114 ntTSL 5 BASIC0.36□□□□□ -2.35
FOXA1P55317 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.36□□□□□ -2.35
FOXA1P55317 MIR6516-201ENST00000630554 81 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 MIR4251-201ENST00000635819 61 ntBASIC0.36□□□□□ -2.35
FOXA1P55317 Y_RNA.30-201ENST00000362572 97 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 RNU6-845P-201ENST00000362578 103 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 Y_RNA.115-201ENST00000363272 98 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 Y_RNA.148-201ENST00000363557 117 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 RNU6-1188P-201ENST00000363795 107 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 SNORD113.3-201ENST00000364630 78 ntBASIC0.35□□□□□ -2.35
FOXA1P55317 Y_RNA.329-201ENST00000365209 107 ntBASIC0.35□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 162.3 ms