Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 RNU2-14P-201ENST00000411053 191 ntBASIC1.48□□□□□ -2.17
MSH2P43246 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.48□□□□□ -2.17
MSH2P43246 RNU7-141P-201ENST00000459304 62 ntBASIC1.48□□□□□ -2.17
MSH2P43246 AC127455.1-201ENST00000565496 145 ntBASIC1.48□□□□□ -2.17
MSH2P43246 MIR3124-201ENST00000582636 67 ntBASIC1.48□□□□□ -2.17
MSH2P43246 AC037487.3-201ENST00000606668 112 ntBASIC1.48□□□□□ -2.17
MSH2P43246 SNORD68-201ENST00000363214 84 ntBASIC1.47□□□□□ -2.17
MSH2P43246 U8.5-201ENST00000364528 136 ntBASIC1.47□□□□□ -2.17
MSH2P43246 Y_RNA.512-201ENST00000384518 102 ntBASIC1.47□□□□□ -2.17
MSH2P43246 RNU6-713P-201ENST00000384761 107 ntBASIC1.47□□□□□ -2.17
MSH2P43246 SNORA26.5-201ENST00000391215 123 ntBASIC1.47□□□□□ -2.17
MSH2P43246 MIR1323-201ENST00000408090 73 ntBASIC1.47□□□□□ -2.17
MSH2P43246 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.47□□□□□ -2.17
MSH2P43246 RNU7-12P-201ENST00000516030 62 ntBASIC1.47□□□□□ -2.17
MSH2P43246 MIR4778-201ENST00000577635 80 ntBASIC1.47□□□□□ -2.17
MSH2P43246 MIR4762-201ENST00000585261 75 ntBASIC1.47□□□□□ -2.17
MSH2P43246 SNORA25.1-201ENST00000362326 128 ntBASIC1.46□□□□□ -2.18
MSH2P43246 RNU6-514P-201ENST00000384208 107 ntBASIC1.46□□□□□ -2.18
MSH2P43246 HMGN1P7-201ENST00000491722 313 ntBASIC1.46□□□□□ -2.18
MSH2P43246 RPL23AP54-201ENST00000495129 419 ntBASIC1.46□□□□□ -2.18
MSH2P43246 RNU6-1338P-201ENST00000516328 91 ntBASIC1.46□□□□□ -2.18
MSH2P43246 RNU6-570P-201ENST00000517051 105 ntBASIC1.46□□□□□ -2.18
MSH2P43246 RNU6-1116P-201ENST00000517269 99 ntBASIC1.46□□□□□ -2.18
MSH2P43246 AL117187.1-201ENST00000555482 181 ntBASIC1.46□□□□□ -2.18
MSH2P43246 CYP3A52P-201ENST00000563326 91 ntBASIC1.46□□□□□ -2.18
MSH2P43246 MIR4769-201ENST00000584126 77 ntBASIC1.46□□□□□ -2.18
MSH2P43246 AL512605.2-201ENST00000592972 256 ntBASIC1.46□□□□□ -2.18
MSH2P43246 AC136443.5-201ENST00000603741 370 ntBASIC1.46□□□□□ -2.18
MSH2P43246 AL360085.1-201ENST00000604713 532 ntBASIC1.46□□□□□ -2.18
MSH2P43246 AC007742.2-201ENST00000618226 398 ntBASIC1.46□□□□□ -2.18
MSH2P43246 RNU6-238P-201ENST00000363313 106 ntBASIC1.45□□□□□ -2.18
MSH2P43246 Y_RNA.203-201ENST00000364106 102 ntBASIC1.45□□□□□ -2.18
MSH2P43246 Y_RNA.574-201ENST00000384766 95 ntBASIC1.45□□□□□ -2.18
MSH2P43246 SNORA67.6-201ENST00000391093 99 ntBASIC1.45□□□□□ -2.18
MSH2P43246 AL354695.1-201ENST00000427935 228 ntBASIC1.45□□□□□ -2.18
MSH2P43246 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.45□□□□□ -2.18
MSH2P43246 AC093850.1-201ENST00000454121 251 ntBASIC1.45□□□□□ -2.18
MSH2P43246 RPL30P7-201ENST00000479312 323 ntBASIC1.45□□□□□ -2.18
MSH2P43246 AC091959.1-201ENST00000495857 238 ntBASIC1.45□□□□□ -2.18
MSH2P43246 CYCTP-201ENST00000504253 315 ntBASIC1.45□□□□□ -2.18
MSH2P43246 SCARNA15.1-201ENST00000516384 125 ntBASIC1.45□□□□□ -2.18
MSH2P43246 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.45□□□□□ -2.18
MSH2P43246 AC106754.2-201ENST00000623006 233 ntBASIC1.45□□□□□ -2.18
MSH2P43246 AC134026.1-201ENST00000623249 2239 ntBASIC1.45□□□□□ -2.18
MSH2P43246 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.44□□□□□ -2.18
MSH2P43246 RNU6-199P-201ENST00000362954 107 ntBASIC1.44□□□□□ -2.18
MSH2P43246 Y_RNA.376-201ENST00000365638 108 ntBASIC1.44□□□□□ -2.18
MSH2P43246 Y_RNA.459-201ENST00000384251 102 ntBASIC1.44□□□□□ -2.18
MSH2P43246 MIR522-201ENST00000385071 87 ntBASIC1.44□□□□□ -2.18
MSH2P43246 RNU6-763P-201ENST00000390865 106 ntBASIC1.44□□□□□ -2.18
MSH2P43246 MTCO2P33-201ENST00000402100 465 ntBASIC1.44□□□□□ -2.18
MSH2P43246 SNORA36B-201ENST00000410438 131 ntBASIC1.44□□□□□ -2.18
MSH2P43246 SNRPGP13-201ENST00000442212 177 ntBASIC1.44□□□□□ -2.18
MSH2P43246 TRBVB-201ENST00000477100 408 ntBASIC1.44□□□□□ -2.18
MSH2P43246 AC092991.1-201ENST00000477176 376 ntBASIC1.44□□□□□ -2.18
MSH2P43246 SERF1AP1-201ENST00000514575 187 ntBASIC1.44□□□□□ -2.18
MSH2P43246 SNORA27.4-201ENST00000516650 95 ntBASIC1.44□□□□□ -2.18
MSH2P43246 AL512310.8-201ENST00000550183 120 ntBASIC1.44□□□□□ -2.18
MSH2P43246 AL160236.1-201ENST00000556317 195 ntBASIC1.44□□□□□ -2.18
MSH2P43246 AC019288.1-201ENST00000557918 224 ntBASIC1.44□□□□□ -2.18
MSH2P43246 AC120024.3-201ENST00000603167 156 ntBASIC1.44□□□□□ -2.18
MSH2P43246 AC027279.3-201ENST00000625055 122 ntBASIC1.44□□□□□ -2.18
MSH2P43246 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.44□□□□□ -2.18
MSH2P43246 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.44□□□□□ -2.18
MSH2P43246 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
MSH2P43246 Y_RNA.140-201ENST00000363474 103 ntBASIC1.43□□□□□ -2.18
MSH2P43246 RNU6-833P-201ENST00000363486 107 ntBASIC1.43□□□□□ -2.18
MSH2P43246 RNU6-899P-201ENST00000363947 107 ntBASIC1.43□□□□□ -2.18
MSH2P43246 RNU6-457P-201ENST00000363999 107 ntBASIC1.43□□□□□ -2.18
MSH2P43246 RNU6-163P-201ENST00000384396 106 ntBASIC1.43□□□□□ -2.18
MSH2P43246 MLLT10P1-201ENST00000418346 262 ntBASIC1.43□□□□□ -2.18
MSH2P43246 PIGPP3-201ENST00000425307 415 ntBASIC1.43□□□□□ -2.18
MSH2P43246 SNRPGP10-201ENST00000432323 225 ntBASIC1.43□□□□□ -2.18
MSH2P43246 Y_RNA.637-201ENST00000459424 114 ntBASIC1.43□□□□□ -2.18
MSH2P43246 RPL39P38-201ENST00000467018 153 ntBASIC1.43□□□□□ -2.18
MSH2P43246 RNU6-237P-201ENST00000515985 71 ntBASIC1.43□□□□□ -2.18
MSH2P43246 DEFB108E-201ENST00000524692 240 ntBASIC1.43□□□□□ -2.18
MSH2P43246 AC008269.2-201ENST00000561915 1105 ntBASIC1.43□□□□□ -2.18
MSH2P43246 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.43□□□□□ -2.18
MSH2P43246 AC005357.1-201ENST00000588399 301 ntBASIC1.43□□□□□ -2.18
MSH2P43246 AP001282.2-201ENST00000616149 309 ntBASIC1.43□□□□□ -2.18
MSH2P43246 MIR8062-201ENST00000621515 85 ntBASIC1.43□□□□□ -2.18
MSH2P43246 RNU6-1272P-201ENST00000362776 107 ntBASIC1.42□□□□□ -2.18
MSH2P43246 U8.1-201ENST00000362843 134 ntBASIC1.42□□□□□ -2.18
MSH2P43246 RNU6-674P-201ENST00000363831 107 ntBASIC1.42□□□□□ -2.18
MSH2P43246 RNU6-662P-201ENST00000384253 104 ntBASIC1.42□□□□□ -2.18
MSH2P43246 MIR891A-201ENST00000401237 79 ntBASIC1.42□□□□□ -2.18
MSH2P43246 AL358176.2-201ENST00000425769 204 ntBASIC1.42□□□□□ -2.18
MSH2P43246 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.42□□□□□ -2.18
MSH2P43246 RNU6-437P-201ENST00000459408 95 ntBASIC1.42□□□□□ -2.18
MSH2P43246 AC114811.1-201ENST00000507207 168 ntBASIC1.42□□□□□ -2.18
MSH2P43246 RNU6-327P-201ENST00000516270 127 ntBASIC1.42□□□□□ -2.18
MSH2P43246 SCARNA24.2-201ENST00000516968 130 ntBASIC1.42□□□□□ -2.18
MSH2P43246 SNORA31.24-201ENST00000517232 57 ntBASIC1.42□□□□□ -2.18
MSH2P43246 MIR8065-201ENST00000620577 100 ntBASIC1.42□□□□□ -2.18
MSH2P43246 UBE2WP1-201ENST00000362030 340 ntBASIC1.41□□□□□ -2.18
MSH2P43246 Y_RNA.162-201ENST00000363683 102 ntBASIC1.41□□□□□ -2.18
MSH2P43246 Y_RNA.176-201ENST00000363815 109 ntBASIC1.41□□□□□ -2.18
MSH2P43246 Y_RNA.217-201ENST00000364214 105 ntBASIC1.41□□□□□ -2.18
MSH2P43246 RNU6-60P-201ENST00000364792 103 ntBASIC1.41□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 139.3 ms