Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
RXRBP28702 RNU4-13P-201ENST00000364019 141 ntBASIC3.28□□□□□ -1.88
RXRBP28702 SNORD31B-201ENST00000364977 69 ntBASIC3.28□□□□□ -1.88
RXRBP28702 RNU6-1274P-201ENST00000384557 107 ntBASIC3.28□□□□□ -1.88
RXRBP28702 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC3.28□□□□□ -1.88
RXRBP28702 MIR1294-201ENST00000408503 142 ntBASIC3.28□□□□□ -1.88
RXRBP28702 RNA5SP127-201ENST00000411051 133 ntBASIC3.28□□□□□ -1.88
RXRBP28702 MICF-203ENST00000432679 129 ntBASIC3.28□□□□□ -1.88
RXRBP28702 AL021397.1-201ENST00000451806 248 ntBASIC3.28□□□□□ -1.88
RXRBP28702 AC080013.2-201ENST00000460866 323 ntBASIC3.28□□□□□ -1.88
RXRBP28702 RNU6-537P-201ENST00000517277 103 ntBASIC3.28□□□□□ -1.88
RXRBP28702 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC3.28□□□□□ -1.88
RXRBP28702 Pinc.1-201ENST00000616452 154 ntBASIC3.28□□□□□ -1.88
RXRBP28702 AC092881.1-201ENST00000638218 2733 ntBASIC3.28□□□□□ -1.88
RXRBP28702 CFH-202ENST00000367429 4127 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
RXRBP28702 RNU6-1083P-201ENST00000384022 107 ntBASIC3.27□□□□□ -1.89
RXRBP28702 RNU6-418P-201ENST00000384035 107 ntBASIC3.27□□□□□ -1.89
RXRBP28702 SNORA46-201ENST00000384762 135 ntBASIC3.27□□□□□ -1.89
RXRBP28702 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.27□□□□□ -1.89
RXRBP28702 AC106754.2-201ENST00000623006 233 ntBASIC3.27□□□□□ -1.89
RXRBP28702 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
RXRBP28702 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.26□□□□□ -1.89
RXRBP28702 SNORD73B-201ENST00000364394 72 ntBASIC3.26□□□□□ -1.89
RXRBP28702 SNORA1-201ENST00000384107 130 ntBASIC3.26□□□□□ -1.89
RXRBP28702 RNU6-1235P-201ENST00000384559 107 ntBASIC3.26□□□□□ -1.89
RXRBP28702 CALM2P4-201ENST00000430810 426 ntBASIC3.26□□□□□ -1.89
RXRBP28702 RNU6-498P-201ENST00000459468 107 ntBASIC3.26□□□□□ -1.89
RXRBP28702 SNORA18.4-201ENST00000516440 124 ntBASIC3.26□□□□□ -1.89
RXRBP28702 AC007536.1-201ENST00000533382 349 ntBASIC3.26□□□□□ -1.89
RXRBP28702 MIR2681-201ENST00000581814 105 ntBASIC3.26□□□□□ -1.89
RXRBP28702 AC090517.3-201ENST00000625170 141 ntBASIC3.26□□□□□ -1.89
RXRBP28702 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC3.26□□□□□ -1.89
RXRBP28702 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC3.26□□□□□ -1.89
RXRBP28702 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.26□□□□□ -1.89
RXRBP28702 RNU6-1107P-201ENST00000364817 104 ntBASIC3.25□□□□□ -1.89
RXRBP28702 AF228730.3-201ENST00000436691 102 ntBASIC3.25□□□□□ -1.89
RXRBP28702 AC104389.3-201ENST00000445629 235 ntBASIC3.25□□□□□ -1.89
RXRBP28702 RPS27P22-201ENST00000478056 241 ntBASIC3.25□□□□□ -1.89
RXRBP28702 NDUFA4P2-201ENST00000489989 244 ntBASIC3.25□□□□□ -1.89
RXRBP28702 AC097462.1-201ENST00000514125 324 ntBASIC3.25□□□□□ -1.89
RXRBP28702 RNU6-948P-201ENST00000516374 107 ntBASIC3.25□□□□□ -1.89
RXRBP28702 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.25□□□□□ -1.89
RXRBP28702 AC002064.3-201ENST00000623448 346 ntBASIC3.25□□□□□ -1.89
RXRBP28702 AC009487.4-201ENST00000624969 3585 ntBASIC3.25□□□□□ -1.89
RXRBP28702 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.24□□□□□ -1.89
RXRBP28702 Y_RNA.85-201ENST00000363014 111 ntBASIC3.24□□□□□ -1.89
RXRBP28702 U8.6-201ENST00000364939 135 ntBASIC3.24□□□□□ -1.89
RXRBP28702 Y_RNA.328-201ENST00000365208 113 ntBASIC3.24□□□□□ -1.89
RXRBP28702 Y_RNA.549-201ENST00000384657 102 ntBASIC3.24□□□□□ -1.89
RXRBP28702 MIR1263-201ENST00000408324 86 ntBASIC3.24□□□□□ -1.89
RXRBP28702 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC3.24□□□□□ -1.89
RXRBP28702 OR9P1P-201ENST00000496431 281 ntBASIC3.24□□□□□ -1.89
RXRBP28702 AC011604.1-201ENST00000545978 196 ntBASIC3.24□□□□□ -1.89
RXRBP28702 PRELID2P1-201ENST00000552837 301 ntBASIC3.24□□□□□ -1.89
RXRBP28702 AC103810.1-201ENST00000579873 453 ntBASIC3.24□□□□□ -1.89
RXRBP28702 AL160408.5-201ENST00000607759 526 ntTSL 4 BASIC3.24□□□□□ -1.89
RXRBP28702 AC110079.1-202ENST00000635213 138 ntBASIC3.24□□□□□ -1.89
RXRBP28702 RNU6-1240P-201ENST00000365155 104 ntBASIC3.23□□□□□ -1.89
RXRBP28702 Y_RNA.528-201ENST00000384575 108 ntBASIC3.23□□□□□ -1.89
RXRBP28702 SNORA26-201ENST00000391286 122 ntBASIC3.23□□□□□ -1.89
RXRBP28702 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
RXRBP28702 AC018634.1-201ENST00000437554 401 ntBASIC3.23□□□□□ -1.89
RXRBP28702 AC012668.1-201ENST00000457625 228 ntTSL 3 BASIC3.23□□□□□ -1.89
RXRBP28702 RNU6-365P-201ENST00000517113 106 ntBASIC3.23□□□□□ -1.89
RXRBP28702 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.23□□□□□ -1.89
RXRBP28702 AC007012.1-201ENST00000567192 175 ntBASIC3.23□□□□□ -1.89
RXRBP28702 MIR4662B-201ENST00000579498 81 ntBASIC3.23□□□□□ -1.89
RXRBP28702 MIR3605-201ENST00000583214 100 ntBASIC3.23□□□□□ -1.89
RXRBP28702 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.23□□□□□ -1.89
RXRBP28702 AC009831.4-201ENST00000620744 325 ntBASIC3.23□□□□□ -1.89
RXRBP28702 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
RXRBP28702 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
RXRBP28702 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
RXRBP28702 RNU6-766P-201ENST00000362478 107 ntBASIC3.22□□□□□ -1.89
RXRBP28702 RNY1P10-201ENST00000363268 113 ntBASIC3.22□□□□□ -1.89
RXRBP28702 CD24P4-201ENST00000382840 243 ntBASIC3.22□□□□□ -1.89
RXRBP28702 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.22□□□□□ -1.89
RXRBP28702 RNA5SP112-201ENST00000515937 99 ntBASIC3.22□□□□□ -1.89
RXRBP28702 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.22□□□□□ -1.89
RXRBP28702 MIR3129-201ENST00000581095 76 ntBASIC3.22□□□□□ -1.89
RXRBP28702 AP001318.4-201ENST00000616637 121 ntBASIC3.22□□□□□ -1.89
RXRBP28702 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
RXRBP28702 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
RXRBP28702 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC3.21□□□□□ -1.9
RXRBP28702 Y_RNA.388-201ENST00000383919 113 ntBASIC3.21□□□□□ -1.9
RXRBP28702 AC008134.1-201ENST00000420943 193 ntBASIC3.21□□□□□ -1.9
RXRBP28702 RNU6-412P-201ENST00000516434 106 ntBASIC3.21□□□□□ -1.9
RXRBP28702 RNU7-172P-201ENST00000517125 64 ntBASIC3.21□□□□□ -1.9
RXRBP28702 MIR4438-201ENST00000585271 93 ntBASIC3.21□□□□□ -1.9
RXRBP28702 MIR1248-201ENST00000629190 106 ntBASIC3.21□□□□□ -1.9
RXRBP28702 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.21□□□□□ -1.9
RXRBP28702 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
RXRBP28702 RNU6-486P-201ENST00000363116 107 ntBASIC3.2□□□□□ -1.9
RXRBP28702 RNU6-49P-201ENST00000384256 107 ntBASIC3.2□□□□□ -1.9
RXRBP28702 MIR548A2-201ENST00000384956 97 ntBASIC3.2□□□□□ -1.9
RXRBP28702 SNORD12C-201ENST00000386307 89 ntBASIC3.2□□□□□ -1.9
RXRBP28702 SNORA12.1-201ENST00000390873 148 ntBASIC3.2□□□□□ -1.9
RXRBP28702 SNORD72-201ENST00000390994 80 ntBASIC3.2□□□□□ -1.9
RXRBP28702 HMGN2P32-201ENST00000444648 269 ntBASIC3.2□□□□□ -1.9
RXRBP28702 AC023449.1-201ENST00000454464 154 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 206.9 ms